DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tai and clocka

DIOPT Version :9

Sequence 1:NP_001245949.1 Gene:tai / 34242 FlyBaseID:FBgn0041092 Length:2047 Species:Drosophila melanogaster
Sequence 2:NP_571032.2 Gene:clocka / 30140 ZFINID:ZDB-GENE-990630-14 Length:892 Species:Danio rerio


Alignment Length:1263 Identity:243/1263 - (19%)
Similarity:412/1263 - (32%) Gaps:420/1263 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   237 QINKCNNEKRRREAENGYIEQLSEILTLNKRGDMTSTKPDKAAILNQVV---RTYREICDKGQNR 298
            ::::..:||:||:..|..|::|..:|..|.|      |.||:.||.:.:   |.::||..:.::.
Zfish    27 RVSRNRSEKKRRDQFNVLIKELGTMLPGNTR------KMDKSTILQKSIDFLRKHKEIAAQSESS 85

  Fly   299 DISSTSTNNNNSTTTTNNNTNSNNNNNTSKPQATSTRCSRCATDNCSIHPVQQGEVSSTEPPLPE 363
            :|.                                                     ...:||   
Zfish    86 EIR-----------------------------------------------------QDWKPP--- 94

  Fly   364 PSLLLGQVPEISAYFEALEHYISGVGWVLLQVNANGIIESCTQNIRDLIGYEKQELYHQPLYMYL 428
               .|..........|||:.:       .|.:..:|.|...::::..|:.:...:|..|.|..:|
Zfish    95 ---FLSNEEFTQLMLEALDGF-------FLAIMTDGNIIYVSESVTSLLEHLPSDLVDQNLLNFL 149

  Fly   429 YSGDHAKLEPIINTMYNNPNGGNSNSANNSGPGGSSAGTSAGVWGDLEELNNGNASQGSNSSGAG 493
            ..|:|:::...::|        :........|               :.|...|..:.....   
Zfish   150 PLGEHSEVYKALST--------HMLEGETLTP---------------DYLKTKNQLEFCCHM--- 188

  Fly   494 GLGGAGGAAAGKKRSISTKVRML--VKDTRTATQTSSNCEEKPLRQSGHQDKYEEVVLIAAPVKD 556
                ..|....|:..:...|:.:  .|...|...::.|..|..:::| .:..:|:.|...|.|:.
Zfish   189 ----LRGTIDPKEPPVYEYVKFIGNFKSLNTVPNSTRNGFEGVIQRS-LRHAFEDRVCFIATVRL 248

  Fly   557 DADASSSVLCLITRPEDESPLEINIQQHVQQQPIEQMTFKLDIHGKILTLD----PTALREPFKQ 617
            ........:|.:                  ::|.|:.|.:..:..|.|.||    |.....||:.
Zfish   249 AKPQFIKEMCTV------------------EEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEV 295

  Fly   618 HLQTWVGRLWQDLCHPHDLSTL-KSHLRDIQDSASANSPGAGAGTSVVSRPFRLRLGAPDVYVHV 681
                 :|....|..|..||.|| |.|...:|         .|.|.|...|    .|.....::.:
Zfish   296 -----LGTSGYDYYHVDDLETLAKCHEHLMQ---------YGKGKSCYYR----FLTKGQQWIWL 342

  Fly   682 KANSRLFLNQTPGEGDFIMSVQTLLNSENDMNSSNTGAGSGGLGLGQLCAMAPSPSLASSLLSSL 746
            :.:..:..:|.....:||:...|:::............|           :..||   ..:.:..
Zfish   343 QTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAEQRRELG-----------IEESP---PEISADK 393

  Fly   747 SMDGLHGGTGSGSSSSPAASGMLPTHLLGGLVGGGQQGGGGNSTQTTSVGGPLMSSAIINGTGLQ 811
            |.|       |||.|.                                          :|.:.|:
Zfish   394 SQD-------SGSESQ------------------------------------------LNTSSLK 409

  Fly   812 QQQQQQQRSGASSSASSSANALVNAFTASPAPAEHSFYGSDTFEFDIAAHSSSFELDPSGGVGAW 876
            :..::...| .:.||||.::...::.||...|.                                
Zfish   410 EALERFDHS-RTPSASSRSSRKSSSHTAVSDPT-------------------------------- 441

  Fly   877 TDSRPNSRASVATPVSTPRPPSGHGFSPAVCASPATPYQLSSHSAASLPSPQSNASAGGGNYGGF 941
                 :::..:.|..|||...|       |.|...|..:.||.|:.|:.|..:..:.|       
Zfish   442 -----STQTKLQTDRSTPPRQS-------VSAIEMTSQRRSSISSQSMSSQTTGQTMG------- 487

  Fly   942 NFHSFDSSDVKPEKDVQQQQNQQQSNNNSSSSNPLLGGGLPNGVGGMLLSQQQQQQQTPPQQQQQ 1006
                 .|...:|    ||.|..|      ::..|:|  .....:..|...::|.:|:|...:...
Zfish   488 -----TSLVSQP----QQPQTLQ------ATVQPVL--QFSTQMDAMQHLKEQLEQRTRMIEANI 535

  Fly  1007 QQQQESSERLRHLLTKSQSMAG-GLGGLGDDEKYFKPEG-----SEEEKHASGGFKMGGQPGGMG 1065
            |:||   |.||.:..:.|.:.| ||      :.:.:|.|     |..:...|...:..|.....|
Zfish   536 QRQQ---EELRQIQDELQRVQGQGL------QMFLQPSGGGLNLSSVQLTQSSSVQTAGTLSMQG 591

  Fly  1066 MFGPMGSMGRGV--GNSSMLHKAGNSQNPMLLKLLNEKSEDDDGNGSGGGPGSMNNSRQSE-LMR 1127
            ...|..::...:  .:||..|..  :|:|....:..:....|.         :.|.::||: ...
Zfish   592 AVVPTATLQSSLQSTHSSTQHTV--TQHPQQTAVQQQNLLRDQ---------TTNLNQQSQRSTH 645

  Fly  1128 QLKNPDGGSHGMHRNSASGNMSTEDLKAMLKIQSDPSLNRKRSLNEPDDDPSAKRSEDKPSKLCT 1192
            .|::|.|.......|:.   |.::..:|.: :|...||.:..|.:   ....|..|:|:..:...
Zfish   646 TLQSPQGALPASLYNTM---MISQPTQANV-VQISTSLAQNSSTS---GAAVATFSQDRQIRFPA 703

  Fly  1193 QNKMLAKLLQNPPKIPKAPNPEQPLQVKTLPDITSSTVSSTLAAPGNLISAGST---GPKAAANR 1254
            ..::|.||:                   |.|....:.:..|....|.:::|.:.   .|:..:..
Zfish   704 TQQLLTKLV-------------------TGPMACGAVMVPTTMFMGQVVTAFAPQQGQPQTISIA 749

  Fly  1255 NRKQQQQQQQQQQQQQQQQVAGIPSQQQQQQPNDVYLSQQQQQQLQSPQLAFQHQQLATTATTSI 1319
            .:...|...||...|.|.|.|   :..|||..|...|:|||.|.||:|:|...:|          
Zfish   750 QQPSAQTADQQTHTQAQTQAA---ATAQQQGQNQAQLTQQQTQFLQAPRLLHSNQ---------- 801

  Fly  1320 TTAASTSAAAAAAAAILGEGDSELSKLLDSVMEYYPDDTPIVTNAPSEASAINDIQKSLMLDVES 1384
                ||.....||..:..:|                    ..|.|..:...::..|         
Zfish   802 ----STQLILQAAFPLQQQG--------------------TFTTATQQQQQLHQQQ--------- 833

  Fly  1385 AAFGNDLNQQLMMTQQQQHQQQQQQQQLLALQLAQQQQQQRQQHLQQPPAYPGMLNMQQQQHQQQ 1449
                    |||...||.|.|||||||||      |||.||:||.|             |||||||
Zfish   834 --------QQLQQQQQLQQQQQQQQQQL------QQQHQQQQQQL-------------QQQHQQQ 871

  Fly  1450 QQQNQQHIMQRLEAMRNQGNQGFQRPPP 1477
            |||...|   |.::|..:.|     |||
Zfish   872 QQQLAAH---RSDSMTERSN-----PPP 891

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
taiNP_001245949.1 HLH 235..286 CDD:238036 15/51 (29%)
PAS 377..442 CDD:214512 13/64 (20%)
PAS_11 591..711 CDD:291273 28/124 (23%)
clockaNP_571032.2 HLH 23..77 CDD:238036 16/55 (29%)
PAS 100..>169 CDD:279347 14/83 (17%)
PAS 109..207 CDD:238075 18/134 (13%)
PAS_11 265..368 CDD:291273 28/120 (23%)
PAS 266..364 CDD:238075 26/115 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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