DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tai and Arnt2

DIOPT Version :9

Sequence 1:NP_001245949.1 Gene:tai / 34242 FlyBaseID:FBgn0041092 Length:2047 Species:Drosophila melanogaster
Sequence 2:NP_036913.3 Gene:Arnt2 / 25243 RGDID:2154 Length:712 Species:Rattus norvegicus


Alignment Length:895 Identity:175/895 - (19%)
Similarity:276/895 - (30%) Gaps:323/895 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 AATAAAQTANLAAALQRSAAIMNAVASPISAN------SANSATSGRKIRRK------TDSKVNL 233
            |..||.....:|:.:..|..:   ..:|::|.      .|..|..|:  ||.      .|.:...
  Rat     2 ATPAAVNPPEMASDIPGSVTL---PVAPMAATGQVRMAGAMPARGGK--RRSGMDFDDEDGEGPS 61

  Fly   234 PQSQINKCNNEKRRREAENGYIEQLSEILTLNKRGDMTST------KPDKAAILNQVVRTYREIC 292
            ..|:.|....|:|||.....||.:||         ||..|      ||||..||...|       
  Rat    62 KFSRENHSEIERRRRNKMTQYITELS---------DMVPTCSALARKPDKLTILRMAV------- 110

  Fly   293 DKGQNRDISSTSTNNNNSTTTTNNNTNSNNNNNTSKPQATSTRCSRCATDNCSIHPVQQGEVSST 357
                         ::..|...|.|.                      :||...            
  Rat   111 -------------SHMKSMRGTGNK----------------------STDGAY------------ 128

  Fly   358 EPPLPEPSLLLGQVPEISAYFEALEHYI--SGVGWVLLQVNANGIIESCTQNIRDLIGYEKQELY 420
                 :||.|..|         .|:|.|  :..|::.:.....|.:...:.::..::...:.|.:
  Rat   129 -----KPSFLTEQ---------ELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQPQSEWF 179

  Fly   421 HQPLYMYLYSGDHAKLEPIINTMYNNPNGGNSNSANNSGPGGSSAGTSAGVWGDLEELNNGNA-S 484
            ...||..::..|..||...:.|..|:                        :.|.:.:|..|.. .
  Rat   180 GSTLYEQVHPDDVEKLREQLCTSENS------------------------MTGRILDLKTGTVKK 220

  Fly   485 QGSNSSGAGGLGGAGGAAAGKKRSISTKVRMLVKDTRTATQTSSNCEEKPL------RQSGHQDK 543
            :|..||..        ...|.:||...::|               |...||      |.:..:.:
  Rat   221 EGQQSSMR--------MCMGSRRSFICRMR---------------CGNAPLDHLPLNRITTMRKR 262

  Fly   544 YEEVVLIAAPVK---------------------------DDAD-ASSSVLCLIT---RPEDESPL 577
            :...:   .|||                           :||| ...|..||:.   .....||:
  Rat   263 FRNGL---GPVKEGEAQYAVVHCTGYIKAWPPAGMSIPEEDADVGQGSKYCLVAIGRLQVTSSPV 324

  Fly   578 EINIQQHVQQQPIEQMTFKLDIHGKILTLDPTALR----EPFKQHLQTWVGRLWQDLCHPHDLST 638
            .:::..  ...|.|.:: :.:..|.|..:||..:.    :|     |..:|:...:.|||.|   
  Rat   325 CMDMSG--MSVPTEFLS-RHNSDGIITFVDPRCISVIGYQP-----QDLLGKDILEFCHPED--- 378

  Fly   639 LKSHLRD-IQDSASANSPGAGAGTSVVSRPFRLRLGAPDVYVHVKANSRLFLNQTPGEGDFIMSV 702
             :||||: .|.......       .|:|..:|.|....: ::.::.:|..|.|....|.::::..
  Rat   379 -QSHLRESFQQVVKLKG-------QVLSVMYRFRTKNRE-WLLIRTSSFTFQNPYSDEIEYVICT 434

  Fly   703 QTLLNSENDMNSSNTGAGSGGLGLGQLCAMAPSPSLASSLLSSLSMDGLHGGTGSGSSSSPAASG 767
            .|.:.......:........||....| :..|.|:|.:         |:|               
  Rat   435 NTNVKQLQQQQAELEVHQRDGLSSYDL-SQVPVPNLPT---------GVH--------------- 474

  Fly   768 MLPTHLLGGLVGGGQQGGGGNSTQTTSVGGPL-MSSAIINGTGLQQQQQQQQR-----SGAS--- 823
                                      ..|.|: .:.||.:       |::..|     :|.|   
  Rat   475 --------------------------EAGKPVEKADAIFS-------QERDPRFAEMFAGISASE 506

  Fly   824 ----SSASSSANALVNAFTASPAPAEHS--FYGSDTFEF----DIAAHSS--------SFELDPS 870
                ||||:|.:..:.: ..||.||.||  .:.|.....    ||.:.||        |.:|:. 
  Rat   507 KKMMSSASASGSQQIYS-QGSPFPAGHSGKAFSSSVVHVPGVNDIQSSSSTGQNISQISRQLNQ- 569

  Fly   871 GGVGAWTDSRPNSRASVATPVSTPRPPSGHGFSPAVCASPATPYQLSSHSAASLPSPQSNA---- 931
             |..|||.|||   .....|..|.....|.|.|....|.|::...|||.:|:   ||..||    
  Rat   570 -GQVAWTGSRP---PFPGQPSKTQSSAFGIGSSHPYPADPSSYSPLSSPAAS---SPSGNAYPSL 627

  Fly   932 ------SAGGGNYGGFNFHSFDSSDVKPEKDVQQQQNQQQSNNNSSSSNP 975
                  .|..|..||    .|.....:.....|.|.:.|||....|...|
  Rat   628 ANRTPGFAESGQSGG----QFQGRPSEVWSQWQSQHHGQQSGEQHSHQQP 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
taiNP_001245949.1 HLH 235..286 CDD:238036 19/56 (34%)
PAS 377..442 CDD:214512 11/66 (17%)
PAS_11 591..711 CDD:291273 26/124 (21%)
Arnt2NP_036913.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20 4/17 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..74 9/40 (23%)
bHLH-PAS_ARNT 62..124 CDD:381517 23/112 (21%)
PAS 137..243 CDD:395786 23/152 (15%)
PAS_11 336..436 CDD:405306 25/117 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 573..712 33/111 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.