DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-zeta and hspg2

DIOPT Version :10

Sequence 1:NP_723441.2 Gene:DIP-zeta / 34231 FlyBaseID:FBgn0051708 Length:532 Species:Drosophila melanogaster
Sequence 2:XP_021325650.1 Gene:hspg2 / 565429 ZFINID:ZDB-GENE-080807-4 Length:3701 Species:Danio rerio


Alignment Length:577 Identity:132/577 - (22%)
Similarity:213/577 - (36%) Gaps:140/577 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 IILPQI-LNGGG-----GGGGVGTAQGKHPSGSKT----VATGVV---PNFGGAAGNGAGGGGPV 77
            :::|.| |:..|     |....|:::. |...|.|    :.:||:   |:.....|........|
Zfish  2199 LVVPNIRLSDAGTYLCVGTNAAGSSEA-HIDVSVTKGENILSGVIIQPPSASVIEGEALDLNCLV 2262

  Fly    78 AGSGTGSTVVGSNGVIVAGGGANVPTSNLNIVVEEPEFT-EYIENV-TVPAGRNVKLGCSVKNLG 140
            .|:.|||......|.::: ....|..:.|.|:....:.| :||..| ..|:.:...:..||.:..
Zfish  2263 PGTSTGSVKWSRAGGLLS-SNHQVLETRLRILRASADDTGDYICTVENGPSPQKATVSVSVTSSA 2326

  Fly   141 SYKVAWMHFEQSAILTV--HNHVITRNPRISVTHDKHDRHR----TWYL---------------- 183
            |..:      |:.|:::  |:.|:.:....|.....|:..:    .|.|                
Zfish  2327 SLGL------QTPIISIEPHSAVVKQGESASFRCKVHNGAQPVRLEWKLTNNLPLPDNVKVGPDS 2385

  Fly   184 ---HINNVHEEDRGRYMCQINTVTAKTQFGYLNVVVPPNIDDS-----LSSSDVIVREGANISLR 240
               .:.|...:::|.|.|     .|...:|..:.:|...:.:|     ..:..|.||.|..|:|.
Zfish  2386 SIMTVTNAQAKNQGTYRC-----VASNLYGMTHSIVSLIVRESPKAVVTPAGPVRVRVGDPINLE 2445

  Fly   241 CRASGSPRPIIKWKRDDNSR-------IAINKNHIVNEWEGDTLEITRISRLDMGAYLCIASNGV 298
            |:|:|.|||.::|.|.||:|       :.::.:.|:        ::......|.|.|:|.|.|. 
Zfish  2446 CQAAGEPRPSVRWHRLDNNRKTMLSSTVPVDSSAII--------QVLVARPEDSGTYVCSAQNN- 2501

  Fly   299 PPTVSKRIKVSVDFPPML-LIPHQLVGAP-----EGFNVTIECFTEAHPTSLNYWTRGEGPIIHD 357
            ..|...|::|.|:..|.: .:|...|..|     ||...|:.|.....|.....|.: |...:..
Zfish  2502 QGTTETRVEVFVEGGPQVPTVPRASVREPMIIVVEGSTATLHCDAHGFPKPTITWFK-ERSSLPW 2565

  Fly   358 SHKYKVEATVGLPAYKTHMKLTIINVSSGDDGIYKCVAKNPRGETDGIIRLYVSYPPTTASSGIY 422
            .||. |:.::.||           ||...|.|.|.|.|.|..|.::..|.|.|..|| .|:|...
Zfish  2566 RHKI-VDNSLILP-----------NVGRQDSGQYVCNATNHLGTSEVTIMLEVDTPP-YATSLPN 2617

  Fly   423 STDTHWGENGINNNYAYGGP-------------DSTRSIYAQDKNTRYQSNL------------- 461
            ......||.......|:|.|             .||..:...|    .|.||             
Zfish  2618 DVSVRVGEVIRLQCLAHGTPPLRYEWTKINGSLPSTAQLQGGD----LQINLAKENDAGTYRCVA 2678

  Fly   462 -NEIGLSEQ------KSFLDKTQNP---LLANGNANEADAESNGARGHNPSMAIAWL 508
             |::|.||.      :|.|....:|   :.|.|:|.|....:.|      .:.|.||
Zfish  2679 SNKVGKSEALAKVSVRSSLSVKVSPQVEVKALGSAVEFTCAAKG------GLQIEWL 2729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-zetaNP_723441.2 IG_like 120..216 CDD:214653 19/121 (16%)
Ig strand B 130..134 CDD:409405 0/3 (0%)
Ig strand C 143..147 CDD:409405 0/3 (0%)
Ig strand E 178..185 CDD:409405 2/29 (7%)
IgI_1_MuSK 218..310 CDD:409562 28/103 (27%)
Ig strand A 218..221 CDD:409562 0/2 (0%)
Ig strand A' 226..231 CDD:409562 1/4 (25%)
Ig strand B 237..244 CDD:409562 3/6 (50%)
Ig strand C 250..255 CDD:409562 1/4 (25%)
Ig strand C' 257..259 CDD:409562 1/1 (100%)
Ig strand D 267..270 CDD:409562 1/2 (50%)
Ig strand E 275..281 CDD:409562 0/5 (0%)
Ig strand F 288..295 CDD:409562 3/6 (50%)
Ig strand G 302..310 CDD:409562 2/7 (29%)
IG_like 325..410 CDD:214653 24/89 (27%)
Ig strand B 331..335 CDD:143207 1/3 (33%)
Ig strand C 344..348 CDD:143207 0/3 (0%)
Ig strand E 376..380 CDD:143207 0/3 (0%)
Ig strand F 390..395 CDD:143207 2/4 (50%)
Ig strand G 403..406 CDD:143207 0/2 (0%)
hspg2XP_021325650.1 SEA 84..198 CDD:470595
LDLa 216..251 CDD:238060
LDLa 277..311 CDD:238060
LDLa 317..351 CDD:238060
LDLa 360..395 CDD:238060
Ig_Perlecan_like 413..490 CDD:143220
Ig strand B 416..422 CDD:143220
Ig strand C 429..434 CDD:143220
Ig strand E 454..458 CDD:143220
Ig strand F 467..473 CDD:143220
Ig strand G 482..488 CDD:143220
Laminin_B 598..732 CDD:459652
EGF_Lam 766..814 CDD:238012
EGF_Lam 831..869 CDD:238012
Laminin_EGF 871..923 CDD:395007
Laminin_B 991..1125 CDD:459652
Laminin_EGF 1159..1206 CDD:395007
EGF_Lam 1208..1261 CDD:238012
Laminin_EGF 1272..1315 CDD:395007
Laminin_B 1536..1671 CDD:459652
EGF_Lam 1705..1754 CDD:238012
EGF_Lam 1755..1811 CDD:238012
IG_like 1823..1903 CDD:214653
Ig strand B 1834..1838 CDD:409549
Ig strand C 1847..1852 CDD:409549
Ig strand E 1870..1873 CDD:409549
Ig strand F 1883..1888 CDD:409549
Ig strand G 1896..1899 CDD:409549
IgI_Perlecan_like 1911..1996 CDD:409412
Ig strand A 1911..1915 CDD:409412
Ig strand A' 1920..1923 CDD:409412
Ig strand B 1927..1937 CDD:409412
Ig strand C 1943..1947 CDD:409412
Ig strand C' 1950..1952 CDD:409412
Ig strand D 1957..1962 CDD:409412
Ig strand E 1963..1969 CDD:409412
Ig strand F 1976..1984 CDD:409412
Ig strand G 1987..1996 CDD:409412
I-set 2025..2109 CDD:400151
Ig strand B 2042..2046 CDD:409353
Ig strand C 2055..2059 CDD:409353
Ig strand E 2075..2079 CDD:409353
Ig strand F 2089..2094 CDD:409353
Ig strand G 2102..2105 CDD:409353
I-set 2119..2231 CDD:400151 7/32 (22%)
Ig strand B 2136..2140 CDD:409420
Ig strand C 2149..2153 CDD:409420
Ig strand E 2197..2201 CDD:409420 0/1 (0%)
Ig strand F 2211..2216 CDD:409420 0/4 (0%)
Ig strand G 2224..2227 CDD:409420 0/3 (0%)
Ig 2241..2309 CDD:472250 16/68 (24%)
Ig strand B 2256..2260 CDD:409353 0/3 (0%)
Ig strand C 2269..2273 CDD:409353 1/3 (33%)
Ig strand F 2302..2307 CDD:409353 2/4 (50%)
IG_like 2339..2420 CDD:214653 13/85 (15%)
Ig strand B 2350..2354 CDD:409399 1/3 (33%)
Ig strand C 2364..2369 CDD:409399 1/4 (25%)
Ig strand E 2386..2390 CDD:409399 0/3 (0%)
Ig strand F 2400..2405 CDD:409399 2/9 (22%)
Ig strand G 2415..2418 CDD:409399 1/2 (50%)
IG_like 2432..2513 CDD:214653 27/89 (30%)
Ig strand B 2442..2446 CDD:409353 2/3 (67%)
Ig strand C 2455..2459 CDD:409353 0/3 (0%)
Ig strand E 2479..2483 CDD:409353 1/11 (9%)
Ig strand F 2493..2498 CDD:409353 2/4 (50%)
Ig strand G 2506..2509 CDD:409353 0/2 (0%)
I-set 2517..2606 CDD:400151 27/101 (27%)
Ig strand B 2540..2544 CDD:409353 1/3 (33%)
Ig strand C 2553..2557 CDD:409353 0/3 (0%)
Ig strand E 2572..2576 CDD:409353 0/3 (0%)
Ig strand F 2586..2591 CDD:409353 2/4 (50%)
Ig strand G 2599..2602 CDD:409353 0/2 (0%)
Ig 2610..2693 CDD:472250 18/87 (21%)
Ig strand B 2627..2631 CDD:409357 0/3 (0%)
Ig strand C 2640..2644 CDD:409357 0/3 (0%)
Ig strand E 2659..2663 CDD:409357 1/7 (14%)
Ig strand F 2673..2678 CDD:409357 0/4 (0%)
Ig strand G 2686..2689 CDD:409357 1/2 (50%)
Ig 2699..2778 CDD:472250 9/37 (24%)
Ig strand B 2714..2718 CDD:409549 1/3 (33%)
Ig strand C 2726..2729 CDD:409549 1/2 (50%)
Ig strand E 2744..2748 CDD:409549
Ig strand F 2758..2763 CDD:409549
Ig strand G 2771..2774 CDD:409549
I-set 2785..2867 CDD:400151
Ig strand B 2801..2805 CDD:409394
Ig strand C 2814..2818 CDD:409394
Ig strand E 2834..2837 CDD:409394
Ig strand F 2847..2852 CDD:409394
Ig strand G 2859..2862 CDD:409394
I-set 2871..2954 CDD:400151
Ig strand B 2888..2892 CDD:409390
Ig strand C 2901..2905 CDD:409390
Ig strand E 2920..2924 CDD:409390
Ig strand F 2934..2939 CDD:409390
Ig strand G 2947..2950 CDD:409390
LamG 2961..3119 CDD:238058
EGF_CA <3146..3175 CDD:238011
LamG 3226..3377 CDD:238058
EGF 3402..3433 CDD:394967
EGF_CA 3441..3470 CDD:238011
LamG 3497..3671 CDD:238058
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.