DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-zeta and robo1

DIOPT Version :9

Sequence 1:NP_723441.2 Gene:DIP-zeta / 34231 FlyBaseID:FBgn0051708 Length:532 Species:Drosophila melanogaster
Sequence 2:NP_476899.1 Gene:robo1 / 37603 FlyBaseID:FBgn0005631 Length:1395 Species:Drosophila melanogaster


Alignment Length:479 Identity:117/479 - (24%)
Similarity:183/479 - (38%) Gaps:107/479 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 IVVEEPEFTEYIENVTVPAGRNVKLGCSVKNLGSYKVAWMHFEQSAILTVHNHVITRNPRISVTH 172
            ||..:|.|.:..::..:..|:.....|||......||.|...|.:..::          |..:.|
  Fly   250 IVQVKPYFMKEPKDQVMLYGQTATFHCSVGGDPPPKVLWKKEEGNIPVS----------RARILH 304

  Fly   173 DKHDRHRTWYLHINNVHEEDRGRYMCQ----INTVTAKTQFGYLNVVVPPNIDDSLSSSDVIVRE 233
            |:..      |.|:|:...|.|.|:|:    :..::|:..   |.|..|||.....|:..|    
  Fly   305 DEKS------LEISNITPTDEGTYVCEAHNNVGQISARAS---LIVHAPPNFTKRPSNKKV---- 356

  Fly   234 GAN--ISLRCRASGSPRPIIKWKRDDNSRIAI-NKNHIVNEWEGD-TLEITRISRLDMGAYLCIA 294
            |.|  :.|.|.|||:|.|.:.|.::..|.:.. |.:|.......| ||:||.:.:.|.|.|:|.|
  Fly   357 GLNGVVQLPCMASGNPPPSVFWTKEGVSTLMFPNSSHGRQHVAADGTLQITDVRQEDEGYYVCSA 421

  Fly   295 SNGV-PPTVSKRIKV-SVDF--PPMLLIPHQLVGAPEGFNVTIECFTEAHPTSLNYWTRGEGPII 355
            .:.| ..||...::| |:|.  ||::.|.......|:|...|:.|....:|:....|       .
  Fly   422 FSVVDSSTVRVFLQVSSLDERPPPIIQIGPANQTLPKGSVATLPCRATGNPSPRIKW-------F 479

  Fly   356 HDSHKYKVEATVGLPAYKTHMKLTIINVSS--------GDDGIYKCVAKNPRGETDGIIRLYVSY 412
            ||.|           |.:...:.:||..||        .|.|.|.|.|...||||.....|.|..
  Fly   480 HDGH-----------AVQAGNRYSIIQGSSLRVDDLQLSDSGTYTCTASGERGETSWAATLTVEK 533

  Fly   413 PPTT-----ASSGIY---------------STDTHWGENG---------INNNYAYGGPD-STRS 447
            |.:|     |....|               |....|.::.         |.....|..|| .|..
  Fly   534 PGSTSLHRAADPSTYPAPPGTPKVLNVSRTSISLRWAKSQEKPGAVGPIIGYTVEYFSPDLQTGW 598

  Fly   448 IYAQDKNTRYQSNLNEIGLSEQKSFL-----DKTQNPLLANGNAN-----EADAESNGARGHNPS 502
            |.|..:....|..::  ||:...|::     :.||...:.:|.:|     |||.::..|.    .
  Fly   599 IVAAQRVGDTQVTIS--GLTPGTSYVFLVRAENTQGISVPSGLSNTIKTIEADFDAASAN----D 657

  Fly   503 MAIAWLFVVIATLLLTIRSAVGSS 526
            ::.|...:...::.|...||:.:|
  Fly   658 LSAARTLLTGKSVELIDASAINAS 681

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
DIP-zetaNP_723441.2 IG_like 120..216 CDD:214653 21/99 (21%)
Ig 130..200 CDD:143165 17/73 (23%)
I-set 226..310 CDD:254352 28/89 (31%)
IGc2 233..298 CDD:197706 23/68 (34%)
Ig 313..410 CDD:299845 27/104 (26%)
IG_like 325..410 CDD:214653 24/92 (26%)
robo1NP_476899.1 Ig 56..151 CDD:299845
I-set 56..150 CDD:254352