DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-zeta and ncam2

DIOPT Version :9

Sequence 1:NP_723441.2 Gene:DIP-zeta / 34231 FlyBaseID:FBgn0051708 Length:532 Species:Drosophila melanogaster
Sequence 2:XP_012811963.1 Gene:ncam2 / 100151722 XenbaseID:XB-GENE-1217730 Length:865 Species:Xenopus tropicalis


Alignment Length:501 Identity:127/501 - (25%)
Similarity:191/501 - (38%) Gaps:110/501 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 GSTVVGSNGVIVAGGG---------ANVPTSNL---------------NIVVEEPEFTEYIENVT 123
            |..::....|:|...|         |||..:.:               .:|:|..:...: |:|.
 Frog    87 GEKIISGQRVVVQREGIRSWLTIYKANVDDAGIYRCQATDSKGHAQEATVVLEIYQKLTF-EDVP 150

  Fly   124 VP----AGRNVKLGCSVKNLGSYKVAWMHFEQSAILTVHNHVITRNPRISVTHDKHDRHRTWY-- 182
            .|    .|.|.::.|.|.:..:..|.|:                 |.|..|| |..||.....  
 Frog   151 SPQEFKRGENAEVLCLVSSSPAPMVRWL-----------------NNREDVT-DIDDRRFAMLPN 197

  Fly   183 --LHINNVHEEDRGRYMCQINT-VTAKTQFGYLNVV--VPPNIDDSLSSSDVIVREGANISLRCR 242
              |.|.|:.:.|.|.|.|:... |..:..|..::|:  |||.|.....|.:.......:|:|.||
 Frog   198 NNLQIKNISKRDEGIYRCEGRVEVRGEIDFRDISVIVNVPPEILAQQRSFNATADRLEDITLFCR 262

  Fly   243 ASGSPRPIIKWKRDDNSRIAINKNHIVNEWEGDT-LEITRISRLDMGAYLCIASNGVPPTVSKRI 306
            |:|||:|.|.|.|  |.:: :.:|...:..|.:| |.:..|...|.|.|:|.|:|....|..:  
 Frog   263 ATGSPKPYITWHR--NGKL-VEENEKYDLREDNTELTVKNIISTDSGLYVCRATNKAGFTEKQ-- 322

  Fly   307 KVSVDFPPMLLIPH--QLVGAP--EGFNVTIECFTEAHPTSLNYWTR-GEGPIIHDSHKY---KV 363
                .|..:.:.||  ||....  |..:||:.|..|..|.....|.| .:|.|.:|..|.   ::
 Frog   323 ----SFLQVFVQPHIVQLQNETTIEHGHVTLTCEAEGEPIPEITWKRSSDGMIFYDGDKSQDGRI 383

  Fly   364 EATVGLPAYKTHMKLTIINVSSGDDGIYKCVAKNPRGETDGIIRLYVSYPPTTASS-GIYSTDTH 427
            |:|    .:.....|.|.:|...|.|.|.|.|.:..|.....:.|.:.|.|...|: .||.:   
 Frog   384 EST----GHHGKSSLHIKSVMLSDAGRYDCEAASRIGGHQKSMYLNIEYAPKFISNQTIYYS--- 441

  Fly   428 WGENGINNNY-AYGGPDSTRSIY-AQDKNTRYQSNLNEIGLSEQKSFLDKTQ-----NPLLAN-- 483
            |..|.||.:. ....|.|  ||| ::||......|:..|     |::.|..:     .||..|  
 Frog   442 WENNPINISCDVTSNPPS--SIYWSRDKLLLPARNITNI-----KTYRDGKRILLEITPLSDNDF 499

  Fly   484 GNANEADAESNGARGHNPSMAIAWLFVVIATLLLTIRSAVGSSHSL 529
            |..|.....|.|:|              |...:||:.....|.:.|
 Frog   500 GRYNCTAINSIGSR--------------IQEYILTLADVPSSPYGL 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-zetaNP_723441.2 IG_like 120..216 CDD:214653 26/106 (25%)
Ig 130..200 CDD:143165 18/73 (25%)
I-set 226..310 CDD:254352 26/84 (31%)
IGc2 233..298 CDD:197706 24/65 (37%)
Ig 313..410 CDD:299845 28/104 (27%)
IG_like 325..410 CDD:214653 24/90 (27%)
ncam2XP_012811963.1 Ig 50..141 CDD:386229 9/53 (17%)
IG_like 150..234 CDD:214653 24/101 (24%)
Ig 237..330 CDD:386229 30/101 (30%)
Ig 329..426 CDD:386229 28/100 (28%)
IG_like 442..520 CDD:214653 24/98 (24%)
FN3 525..617 CDD:238020 2/7 (29%)
fn3 623..706 CDD:365830
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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