DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-zeta and lsamp

DIOPT Version :10

Sequence 1:NP_723441.2 Gene:DIP-zeta / 34231 FlyBaseID:FBgn0051708 Length:532 Species:Drosophila melanogaster
Sequence 2:XP_031751462.1 Gene:lsamp / 100124984 XenbaseID:XB-GENE-5759171 Length:368 Species:Xenopus tropicalis


Alignment Length:369 Identity:109/369 - (29%)
Similarity:162/369 - (43%) Gaps:58/369 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 VPTSNLNIVVEEPEFTEYIENVTVPAGRNVKLGCSVKNLGSYKVAWMHFEQSAILTVHNHVITRN 165
            :||   .:.|...:|....:|:||..|....|.|.|::..| :|||::  :|.|:...:...:.:
 Frog    23 LPT---GLPVRSGDFNRSTDNITVRQGDTAILRCFVEDRSS-RVAWLN--RSGIIFAGDDKWSLD 81

  Fly   166 PRISVTHDKHDRHRTWY-LHINNVHEEDRGRYMCQINTVT-AKTQFGYLNVVVPPNIDDSLSSSD 228
            ||:.:    ..|....| |.|..|...|.|.|.|.:.|.. .||...||.|.|||.|  |..|:|
 Frog    82 PRVEL----EKRSLLEYSLRIQKVDVSDEGPYTCSVQTKQHTKTTQVYLIVQVPPKI--SNISAD 140

  Fly   229 VIVREGANISLRCRASGSPRPIIKWKRDDNSRIAINKNHI--------VNEWEGDT--LEITRIS 283
            :.|.||:|::|.|.|.|.|.|:|.|:            |:        ..::||:.  |||..|:
 Frog   141 ITVNEGSNVTLMCIAYGRPEPMITWR------------HLTPTAGTSPARDFEGEEEFLEIQGIT 193

  Fly   284 RLDMGAYLCIASNGVPPTVSKRIKVSVDFPPMLLIPHQLVGAPEGFNVTIECFTEAHPTSLNYWT 348
            |...|.|.|.|:|.|.....|:::|:|::|| ::...:...|..|....:.|...|.|.....|.
 Frog   194 REQSGRYECKAANEVASADVKQVRVTVNYPP-IITESKSNEATTGKQAILRCEASAVPAPDFEWY 257

  Fly   349 RGEGPIIHDSHKYKVEATVGLPAYKTHMK--LTIINVSSGDDGIYKCVAKNPRGETDGIIRLYVS 411
            :      .|:...::.:..||....|..:  |.:.||:....|.|.|||.|..|.|:..:.||..
 Frog   258 K------DDTRSRRINSAQGLEIRNTGSRSVLMVANVTEEHYGNYTCVAANKLGITNTSLYLYKR 316

  Fly   412 YPPTTASSGIYSTDTHWGENGINNNYAY----GGP-DSTRSIYA 450
            ..||...|.        .|.|.|.:|.|    |.| ||..|:.|
 Frog   317 VSPTKPMSA--------SERGSNVHYQYKVGPGTPIDSATSLAA 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-zetaNP_723441.2 IG_like 120..216 CDD:214653 30/97 (31%)
Ig strand B 130..134 CDD:409405 1/3 (33%)
Ig strand C 143..147 CDD:409405 2/3 (67%)
Ig strand E 178..185 CDD:409405 2/7 (29%)
IgI_1_MuSK 218..310 CDD:409562 33/101 (33%)
Ig strand A 218..221 CDD:409562 1/2 (50%)
Ig strand A' 226..231 CDD:409562 2/4 (50%)
Ig strand B 237..244 CDD:409562 2/6 (33%)
Ig strand C 250..255 CDD:409562 2/4 (50%)
Ig strand C' 257..259 CDD:409562 0/1 (0%)
Ig strand D 267..270 CDD:409562 1/10 (10%)
Ig strand E 275..281 CDD:409562 3/7 (43%)
Ig strand F 288..295 CDD:409562 3/6 (50%)
Ig strand G 302..310 CDD:409562 2/7 (29%)
IG_like 325..410 CDD:214653 22/86 (26%)
Ig strand B 331..335 CDD:143207 0/3 (0%)
Ig strand C 344..348 CDD:143207 0/3 (0%)
Ig strand E 376..380 CDD:143207 1/5 (20%)
Ig strand F 390..395 CDD:143207 2/4 (50%)
Ig strand G 403..406 CDD:143207 0/2 (0%)
lsampXP_031751462.1 Ig 38..128 CDD:472250 29/96 (30%)
Ig strand B 49..53 CDD:409353 1/3 (33%)
Ig strand C 61..65 CDD:409353 2/3 (67%)
Ig strand E 94..98 CDD:409353 2/3 (67%)
Ig strand F 108..113 CDD:409353 2/4 (50%)
Ig strand G 121..124 CDD:409353 1/2 (50%)
Ig_3 131..206 CDD:464046 30/88 (34%)
Ig_3 223..302 CDD:464046 20/85 (24%)

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