DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcd-1r and AT5G12980

DIOPT Version :9

Sequence 1:NP_609269.1 Gene:Rcd-1r / 34229 FlyBaseID:FBgn0032089 Length:290 Species:Drosophila melanogaster
Sequence 2:NP_196802.1 Gene:AT5G12980 / 831138 AraportID:AT5G12980 Length:311 Species:Arabidopsis thaliana


Alignment Length:290 Identity:147/290 - (50%)
Similarity:190/290 - (65%) Gaps:2/290 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSAEPSPVMSPQQQAEREKVYQLIIELAYPATRETALLELSK--NTYADLAPMLWKSVGTTCTLL 63
            :|...||..|.....:.....|||::|:.|..||.||.||||  ..:.||||:||.||||...||
plant    15 LSGASSPSSSSNNDRKLSSAEQLILDLSNPELRENALHELSKKREIFQDLAPLLWHSVGTIPALL 79

  Fly    64 QEIVNIYPIITTPVLKANQSNRVCYALTLLQCVASHPETRPAFLRDQIPMYLYPFLSTTFKSRPF 128
            |||:.:||.::.|.:...||||||.||.||||||||.:||..||:..:|:|||.||:|:.|||||
plant    80 QEIIAVYPALSPPTMTPAQSNRVCNALALLQCVASHTDTRMLFLKAHLPLYLYAFLNTSSKSRPF 144

  Fly   129 EQLRLTTLGVINALAETGDTEVLIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLT 193
            |.||||:||||.||.:..||||:.||:.:|:||.||..|..||:|:|..||.|::|:|||::||.
plant   145 EYLRLTSLGVIGALVKVDDTEVIRFLLQTEIVPLCLRTMENGSELSKTVATFIVQKVLLDDVGLE 209

  Fly   194 YICENHDRFSQVAITLGKMVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLPDLLRDGTF 258
            |:|...:||..:...||.||..:.:.|..|:|||::||||.||:|.||..||..||||||||.||
plant   210 YMCTTAERFFALGRVLGNMVTSLAEGPSARLLKHIIRCYLRLTDNPRACDALGSCLPDLLRDATF 274

  Fly   259 TSLVQHDTCTKQWLQMLLKNLQTNAVNPMG 288
            :..:..|....||||.||.|:......|.|
plant   275 SGCLYDDPPAMQWLQQLLHNVNVGGRAPQG 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcd-1rNP_609269.1 Rcd1 32..279 CDD:281998 135/248 (54%)
AT5G12980NP_196802.1 Rcd1 37..295 CDD:397961 139/257 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5209
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 358 1.000 Inparanoid score I597
OMA 1 1.010 - - QHG53719
OrthoDB 1 1.010 - - D1129961at2759
OrthoFinder 1 1.000 - - FOG0003765
OrthoInspector 1 1.000 - - mtm1000
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12262
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2622
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.940

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