DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rcd-1r and AT2G32550

DIOPT Version :9

Sequence 1:NP_609269.1 Gene:Rcd-1r / 34229 FlyBaseID:FBgn0032089 Length:290 Species:Drosophila melanogaster
Sequence 2:NP_180814.2 Gene:AT2G32550 / 817816 AraportID:AT2G32550 Length:322 Species:Arabidopsis thaliana


Alignment Length:297 Identity:93/297 - (31%)
Similarity:142/297 - (47%) Gaps:26/297 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SAEPSPVMSPQQQAEREKVYQLIIELAYPAT--RETALLELS--KNTYADLAPMLWKSVGTTCTL 62
            |:.|.|.:|.......|.:.|.:.::..|.:  .:.||..|:  :|.:..|..:||:|..|...:
plant    31 SSAPPPRLSVVAHPTVEMIIQWVCDIHKPKSYMSDFALHNLAYHRNDFEFLPSLLWESKNTVYIM 95

  Fly    63 LQEI------------VNIYPIITTPVLKANQSNRVCYALTLLQCVASHPETRPAFLRDQIPMYL 115
            |||:            :.::|....|:       ||.....|.|.:|.||:|...|||.::|.|.
plant    96 LQEVFEAYRHLAGHISLRLFPHPLNPL-------RVYNVFLLFQSMACHPDTSRQFLRAKMPNYF 153

  Fly   116 YPFLSTTFKSRPFEQLRLTTLGVI-NALAETGDTEVLIFLIWSEVVPHCLTNMVRGSKLTKIAAT 179
            ||.:.|....:..|.:||..|||| :.|..:.|..|..:|:.|.||..|:..:..||..||..|.
plant   154 YPLMDTGLIDKSDECMRLAALGVIAHMLKASEDGAVNRYLMESGVVGFCVKPIEFGSTETKKVAL 218

  Fly   180 SILEKILLDEMGLTYICENHDRFSQVAITLGKMVIHMLKF--PCLRVLKHVVRCYLLLTENARAR 242
            .||:||:..:.||.|.|...|||..:...|.|::.::...  |...:...|..||:.|::|:|||
plant   219 YILDKIMSTDQGLYYCCVLADRFYVIDELLKKVLFYLSNMVRPPSSLFSLVTGCYVKLSQNSRAR 283

  Fly   243 SALRVCLPDLLRDGTFTSLVQHDTCTKQWLQMLLKNL 279
            :.:|...|.||.||||:.|...|.........||:||
plant   284 NGIRRYTPFLLFDGTFSRLYAEDPVAANNRIQLLQNL 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcd-1rNP_609269.1 Rcd1 32..279 CDD:281998 84/265 (32%)
AT2G32550NP_180814.2 Rcd1 65..320 CDD:281998 84/261 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5209
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1129961at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12262
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.880

Return to query results.
Submit another query.