DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcd-1r and rcd1

DIOPT Version :9

Sequence 1:NP_609269.1 Gene:Rcd-1r / 34229 FlyBaseID:FBgn0032089 Length:290 Species:Drosophila melanogaster
Sequence 2:NP_594984.1 Gene:rcd1 / 2542094 PomBaseID:SPAC29B12.06c Length:283 Species:Schizosaccharomyces pombe


Alignment Length:267 Identity:136/267 - (50%)
Similarity:180/267 - (67%) Gaps:2/267 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 VYQLIIELAYPATRETALLELS--KNTYADLAPMLWKSVGTTCTLLQEIVNIYPIITTPVLKANQ 82
            ||:.||:|....:||.||:|||  :..|.|||.:||.|.|....|||||:::||::..|.|....
pombe    14 VYEWIIQLVSGTSREQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVYPLLNPPTLTGPT 78

  Fly    83 SNRVCYALTLLQCVASHPETRPAFLRDQIPMYLYPFLSTTFKSRPFEQLRLTTLGVINALAETGD 147
            |||||.||.||||:|||||||..||...|.::|||||:|..||:|||.||||:||||.||.:...
pombe    79 SNRVCNALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFEYLRLTSLGVIGALVKNDS 143

  Fly   148 TEVLIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLTYICENHDRFSQVAITLGKM 212
            .||:.||:.:|::|.||..|..||:|:|..|..|::|.|.|::||.|||:.::||..||..|..|
pombe   144 PEVINFLLSTEIIPLCLRIMENGSELSKTVAIFIVQKFLCDDVGLQYICQTYERFYAVASVLNNM 208

  Fly   213 VIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLPDLLRDGTFTSLVQHDTCTKQWLQMLLK 277
            |:.::.....|:||||:||||.|::|.|||.|||.|||:.|||.||..:::.|..||:.|..||.
pombe   209 VMQLVDSFAFRLLKHVIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLI 273

  Fly   278 NLQTNAV 284
            ||...||
pombe   274 NLSDVAV 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcd-1rNP_609269.1 Rcd1 32..279 CDD:281998 127/248 (51%)
rcd1NP_594984.1 Rcd1 1..280 CDD:295198 134/265 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 333 1.000 Domainoid score I202
eggNOG 1 0.900 - - E1_COG5209
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 337 1.000 Inparanoid score I503
OMA 1 1.010 - - QHG53719
OrthoFinder 1 1.000 - - FOG0003765
OrthoInspector 1 1.000 - - otm46982
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12262
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2622
TreeFam 1 0.960 - -
109.930

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