DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13102 and Ly6l

DIOPT Version :9

Sequence 1:NP_001245948.1 Gene:CG13102 / 34228 FlyBaseID:FBgn0032088 Length:150 Species:Drosophila melanogaster
Sequence 2:XP_003750414.2 Gene:Ly6l / 686432 RGDID:1597652 Length:190 Species:Rattus norvegicus


Alignment Length:140 Identity:33/140 - (23%)
Similarity:50/140 - (35%) Gaps:54/140 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ALIVSI-----LVAFVCVQIADSLKCYTCVT--------PKDCKSPKKVTCTNAAANETSYYLGV 56
            |.:||:     |:|.|..  |.:|.|:.|..        |.:|:..:||    ..:||...|   
  Rat    60 ASLVSVELTRGLMATVVP--ARNLSCFQCFKVRRASLCHPMECQPSEKV----CVSNEVLLY--- 115

  Fly    57 YHQNVGNLTSTRF------DCLALKYNWNNDVIHQLHGCVHPNVGACSLALKPAYAHYNKTWCLT 115
                    |||:.      .| |:....:||:.              ..::|...|...:. |  
  Rat   116 --------TSTKSRTQISKRC-AITCPNSNDLF--------------EWSVKNIQARITRR-C-- 154

  Fly   116 CSGDKCNKNP 125
            ||.|.||:.|
  Rat   155 CSWDHCNRAP 164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13102NP_001245948.1 None
Ly6lXP_003750414.2 LU 81..163 CDD:238065 25/114 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1592016at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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