DRSC/TRiP Functional Genomics Resources

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Protein Alignment alien and cops2

DIOPT Version :9

Sequence 1:NP_001260276.1 Gene:alien / 34225 FlyBaseID:FBgn0013746 Length:444 Species:Drosophila melanogaster
Sequence 2:NP_001015820.1 Gene:cops2 / 548537 XenbaseID:XB-GENE-954196 Length:443 Species:Xenopus tropicalis


Alignment Length:444 Identity:373/444 - (84%)
Similarity:406/444 - (91%) Gaps:1/444 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDNDDDFMCDDDEDYGLEYSEDSNSEPDVDLENQYYNSKALKEEEPKAALASFQKVLDLENGEK 65
            |||.:|||||||:|||.|||||||||||:|||||||||||||||::|||||:||||||:|| |||
 Frog     1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELE-GEK 64

  Fly    66 GEWGFKALKQMIKINFRLCNYDEMMVRYKQLLTYIKSAVTRNHSEKSINSILDYISTSKNMALLQ 130
            ||||||||||||||||:|.||.|||.|||||||||:||||||:||||||||||||||||.|.|||
 Frog    65 GEWGFKALKQMIKINFKLGNYPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQ 129

  Fly   131 NFYETTLDALRDAKNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQL 195
            .||||||:||:|||||||||||||||||||.:|.::.||||||:|||||||||||||||||||||
 Frog   130 EFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQL 194

  Fly   196 LEIYALEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 260
            ||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
 Frog   195 LEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 259

  Fly   261 EAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDIN 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||::||||||.
 Frog   260 EAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDIT 324

  Fly   326 EFETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLL 390
            |||.||:.:.||||.|.|||||||:||||||||||||||:||..|.||||:..|||:.|:|||||
 Frog   325 EFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLL 389

  Fly   391 VSCILDDTIKGRIDQVNQVLQLDKINSSASRYNALEKWSNQIQSLQFAVVQKMA 444
            |.||||:||.||||||||:|:||......:||.||:||:||:.||..|||.|:|
 Frog   390 VQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alienNP_001260276.1 RPN6 104..410 CDD:227488 267/305 (88%)
PCI 310..414 CDD:396121 77/103 (75%)
cops2NP_001015820.1 RPN6 40..434 CDD:227488 332/394 (84%)
PCI 309..413 CDD:396121 77/103 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 570 1.000 Domainoid score I229
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3124
Inparanoid 1 1.050 748 1.000 Inparanoid score I573
OMA 1 1.010 - - QHG53950
OrthoDB 1 1.010 - - D1108845at2759
OrthoFinder 1 1.000 - - FOG0005623
OrthoInspector 1 1.000 - - oto103937
Panther 1 1.100 - - LDO PTHR10678
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4026
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.080

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