DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp29Fb and Tspan31

DIOPT Version :10

Sequence 1:NP_523516.1 Gene:Tsp29Fb / 34212 FlyBaseID:FBgn0032075 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_001008379.1 Gene:Tspan31 / 362890 RGDID:1309876 Length:210 Species:Rattus norvegicus


Alignment Length:249 Identity:59/249 - (23%)
Similarity:92/249 - (36%) Gaps:56/249 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 GMKCAKYMLIIVSFMFALTAILLIMVGTTIQTIFGDFSLFIDGHFSSPPALLIAIGFILIAVAAL 75
            |..|:|..|..::.::.|..:|||.|....:.:....|:.|.|.       :||:|..|:.:|..
  Rat     5 GFACSKNALCALNVVYMLVGLLLIGVAAWGKGLGVVSSIHIIGG-------VIAVGVFLLLIAVA 62

  Fly    76 GAYGAVKESVMVINLYGVCLFLVFILEVSAAIAAFVMQSQVRGMLIRTMNQALA-EYEHDPYVES 139
            |..|||....:::..|.:.|.||||.:...:.:...:....:..:|......|: ...|:     
  Rat    63 GLVGAVNHHQVLLFFYMIILGLVFIFQFGISCSCLAINRNTQADVINASWWVLSNSTRHE----- 122

  Fly   140 GVDFMQSMLECCGVNEPEDWKDYLSANVNFTLGV----DDVVVPNSCCGNQPTSLNDSTQMTCME 200
                ::...:|||:               |.|..    ||.    ||.....|  ..|....|.|
  Rat   123 ----LERSFDCCGL---------------FNLTTVHLHDDA----SCSALCKT--RSSPCQMCGE 162

  Fly   201 TYDYGCFRKMNFIVSQSAMLIATG-ATTVAFVQLLGVLCAFMLAKTLRRNKSIR 253
            |     |.|.    |..|:.|..| ....:|.::|||    .||...|..|..|
  Rat   163 T-----FLKH----SDKALKILGGVGLFFSFTEILGV----WLAMRFRNQKDPR 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp29FbNP_523516.1 Tetraspanin 16..244 CDD:459767 53/233 (23%)
tetraspanin_LEL 109..210 CDD:351888 18/105 (17%)
Tspan31NP_001008379.1 Tetraspanin 9..196 CDD:459767 54/236 (23%)

Return to query results.
Submit another query.