DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp29Fb and si:ch73-139j3.4

DIOPT Version :10

Sequence 1:NP_523516.1 Gene:Tsp29Fb / 34212 FlyBaseID:FBgn0032075 Length:308 Species:Drosophila melanogaster
Sequence 2:XP_068074269.1 Gene:si:ch73-139j3.4 / 101884436 ZFINID:ZDB-GENE-140106-202 Length:355 Species:Danio rerio


Alignment Length:314 Identity:68/314 - (21%)
Similarity:116/314 - (36%) Gaps:60/314 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LIIVSFMFALTAILLIMVGTTI----QTIFGDFSLFIDGHFSSPPALLIA-----IGFILIAVAA 74
            |.|:.|.|.|.....:::|.:|    ..|..|...|:....|.....::|     ||.:::.|:.
Zfish     7 LQILKFFFMLVNAFFVILGISIFACSAWILFDKDSFVSVLSSGQEVKVVAGGLFFIGLVVVGVSL 71

  Fly    75 LGAYGAVKESVMVINLYGVCLFLVFILEVSAAIAAFVMQSQVRGMLIRTMNQALAEYEHDPYVES 139
            ||..||..||...|..|...|.::.:.::.......:.:..:...|...:::.:.:|..|....|
Zfish    72 LGCAGAYFESRCFIIFYLSFLIVIILGQIFITFVLLIRRKTIEQFLRDKVDEIIKQYGGDEIQTS 136

  Fly   140 G--VDFMQSMLECCGVNEPEDWKDYLSANVNFTLGVDDVVVPNSCCGNQPTSLNDSTQMTCMETY 202
            .  :|.:|:...|||.....:|:   :..|..:||..| :.|.||       .|.:..:...|||
Zfish   137 WKLLDSVQTSARCCGRLNSNEWR---NNTVIASLGGTD-IYPCSC-------FNGTCPVILEETY 190

  Fly   203 DY---------GC------FRKMNFIV--SQSAMLIATGATTVAFVQLLGVLCAFMLAKTLRRNK 250
            .:         ||      :.:||.||  .....||        .:|::..:.|....|.:.   
Zfish   191 SFGNGSDVFERGCEETLVNWLEMNIIVIFGMDVALI--------LIQIMQFIFAVQTFKCIG--- 244

  Fly   251 SIREARRWQLQQSLGVLISGGKMAPPQNSAVTGYQQLDNGEQGSHEPYTYTPQS 304
              |:.|.......|..:.......|.|.......||:|:        .||.||:
Zfish   245 --RKTRELHPSNLLNAMEENPAADPDQEQYSLENQQIDD--------QTYNPQT 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp29FbNP_523516.1 Tetraspanin 16..244 CDD:459767 55/252 (22%)
tetraspanin_LEL 109..210 CDD:351888 23/117 (20%)
si:ch73-139j3.4XP_068074269.1 Tetraspanin 10..237 CDD:459767 52/245 (21%)
tetraspanin_LEL 117..215 CDD:351888 24/108 (22%)

Return to query results.
Submit another query.