DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp29Fb and tspan4

DIOPT Version :10

Sequence 1:NP_523516.1 Gene:Tsp29Fb / 34212 FlyBaseID:FBgn0032075 Length:308 Species:Drosophila melanogaster
Sequence 2:XP_002936078.2 Gene:tspan4 / 100492951 XenbaseID:XB-GENE-29081423 Length:330 Species:Xenopus tropicalis


Alignment Length:142 Identity:35/142 - (24%)
Similarity:54/142 - (38%) Gaps:27/142 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 RHGDGSVRSIVRAAQLAAKVKRESGNDRIE-PQSDDDDDDKADEIIYDQRQGAGETNIRLSIKNF 90
            |.|....|| .|.|:.....||.|.:.|.. ||:.....        ..|:||..     |.:..
 Frog   561 RKGSSPSRS-TREARSPQPNKRHSPSPRPRAPQTSSSPP--------PVRRGASS-----SPQRR 611

  Fly    91 QLQLPESE-LKRLQSTDMVRLIQ-------NSVLRLFGI-GVGSDPEPEATSRSPPVAEQPASTE 146
            |...|.:. ::|:..|...:.|:       .||.|:... .|...|||.|  :.||....|..::
 Frog   612 QSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAA--KKPPAPPSPVQSQ 674

  Fly   147 RQPIENFAQSLP 158
             .|..|::.::|
 Frog   675 -SPSTNWSPAVP 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp29FbNP_523516.1 Tetraspanin 16..244 CDD:459767 35/142 (25%)
tetraspanin_LEL 109..210 CDD:351888 15/58 (26%)
tspan4XP_002936078.2 Tetraspanin 102..320 CDD:459767
NET-5_like_LEL 197..294 CDD:239418
Blue background indicates that the domain is not in the aligned region.

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