DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp29Fa and tspan4b

DIOPT Version :9

Sequence 1:NP_001162915.1 Gene:Tsp29Fa / 34211 FlyBaseID:FBgn0032074 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_001076276.1 Gene:tspan4b / 556934 ZFINID:ZDB-GENE-070410-127 Length:232 Species:Danio rerio


Alignment Length:258 Identity:80/258 - (31%)
Similarity:117/258 - (45%) Gaps:48/258 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSLLTGSANAVKYTLFGFNLIFLITGIILIAVGAGVGAVYTGYKLFLAGKFFSIP---------T 56
            ||:..|....|||.:|.|||||.:.|..|..||.        :..|...:|.|:|         .
Zfish     1 MSVSRGCLCCVKYLMFVFNLIFWLGGCGLFGVGV--------WLAFTQSEFSSLPLSFPSLSAAN 57

  Fly    57 FLIVIGSFIIIISFFGCWGALKENYCLVLSFSVMLAIIFILE----LAAGISGYVLRNDASDLIK 117
            .|:|.|...::..|.||.|||||..||:|:|.|:|.|:.:.|    |...:....|...|.|.::
Zfish    58 LLLVAGGVTMVTGFLGCLGALKEQKCLLLTFFVILLILVLTEVVLILVLSLYHEELDKKAKDDLR 122

  Fly   118 TSLT-YSLNEYNSINPNATTKLWDDIQDEFECCGVTSYNDWITAFPNGDLPISCCNVHVGAVGTF 181
            ..:. ||.|:       ...|.||::|..|:||||:::.||.....:|.||.||           
Zfish   123 EGMKGYSKND-------GLRKSWDNMQMIFKCCGVSNHTDWHNKTTDGKLPGSC----------- 169

  Fly   182 TCNNAQSSVADRH-KVGCLDGFSGYISAHAVSLGAAGVVIAILQFFGVIFA----CYIAREIK 239
             |:|..||.  || :..|.:....::..:..|:...||.|.|:|...::|:    |.|.|..|
Zfish   170 -CSNDPSSC--RHWEEPCYEKAKQWLLTNITSVLGFGVCIGIVQLLALVFSMLMYCQILRAEK 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp29FaNP_001162915.1 Tetraspannin 11..238 CDD:278750 76/245 (31%)
tetraspanin_LEL 106..210 CDD:239401 29/105 (28%)
tspan4bNP_001076276.1 Tetraspannin 10..224 CDD:278750 74/242 (31%)
NET-5_like_LEL 108..196 CDD:239418 29/108 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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