DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp29Fa and Tsp26A

DIOPT Version :9

Sequence 1:NP_001162915.1 Gene:Tsp29Fa / 34211 FlyBaseID:FBgn0032074 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_001097093.1 Gene:Tsp26A / 33838 FlyBaseID:FBgn0031760 Length:314 Species:Drosophila melanogaster


Alignment Length:246 Identity:60/246 - (24%)
Similarity:117/246 - (47%) Gaps:43/246 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VKYTLFGFNLIFLITGIILIAVGAGVGAVYTGYKLFLAGKFFSI-PTF-LIVIGSFIIIISFFGC 73
            :||.||..|:|..::.:::::||....:....::......|.:: |.| ||::|....::.|.|.
  Fly    19 LKYLLFASNVILWLSALLVLSVGIWAWSEKGMFRNIARLHFIALDPAFVLIILGGVTFLLGFMGS 83

  Fly    74 WGALKENYCLVLSFSVMLAIIFILELAAGISGYVL------RNDASDLIKTSLTYSLNEYNSINP 132
            .|||:||.||:.::::.|:::.|.|:......:||      ::.|::.:|..:.:...:.:..| 
  Fly    84 VGALRENTCLLGAYAIFLSVLLIAEIGFCAVAFVLKDKGWIKDQATEGLKAFIRHYREDADQQN- 147

  Fly   133 NATTKLWDDIQDEF-ECCGVTSYNDWITAFPNGDLPISCCNVHVG---AVGT-FTC--------- 183
                 |.|.||::: :|||:....||     :.:...:|.::.:|   |.|. |:|         
  Fly   148 -----LIDWIQEDWLQCCGIDGPKDW-----DSNNYFNCSSIAIGSREACGVPFSCCRRRPQEVI 202

  Fly   184 NNAQSSV--------ADR--HKVGCLDGFSGYISAHAVSLGAAGVVIAILQ 224
            .|.|...        .||  |:.|||.....::.||.:|:....|.:.:||
  Fly   203 KNKQCGYDVRKEGYPVDRNIHERGCLRAGEDWLEAHLISVAIGCVALLVLQ 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp29FaNP_001162915.1 Tetraspannin 11..238 CDD:278750 60/246 (24%)
tetraspanin_LEL 106..210 CDD:239401 29/133 (22%)
Tsp26ANP_001097093.1 Tetraspannin 18..253 CDD:278750 58/244 (24%)
DUF2207 <65..157 CDD:303056 25/97 (26%)
TM4SF9_like_LEL 118..239 CDD:239412 28/131 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45442924
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.