DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp29Fa and Rom1

DIOPT Version :10

Sequence 1:NP_523515.1 Gene:Tsp29Fa / 34211 FlyBaseID:FBgn0032074 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_001009690.1 Gene:Rom1 / 309201 RGDID:1306070 Length:351 Species:Rattus norvegicus


Alignment Length:260 Identity:51/260 - (19%)
Similarity:87/260 - (33%) Gaps:77/260 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 IAVGAGVGAVYTGYKLFLAGKF---FSIPTFLIVIGSFIIIISFFGCWGALKENYCLVLSFSVML 91
            :|:|.|:|..........|.::   ..:.|.|:|:|:        ...|.|       |:..:.|
  Rat    72 VALGTGLGGAGASRASLDAAQYPPWRGVLTPLLVVGT--------AAGGGL-------LTLGLGL 121

  Fly    92 AIIFILELAAGISGYVLRNDASDLIKTSLTYSLNEYNSIN-PN--ATTKLWDDIQDEFECCGVTS 153
            |:...:.|..|             ::..|..:|..|.... |.  ...:|.|::|..:.|||...
  Rat   122 ALALPVSLHQG-------------LEEGLQAALAHYKDTEVPGHCQAKRLMDELQLRYHCCGRHG 173

  Fly   154 YNDWITA--------FPNGD------------------LPISCCNVHVGAVGTFTCNNAQSSVAD 192
            |.||...        .||..                  :|.||||.|    ....|..:|.|...
  Rat   174 YKDWFGVQWVSSRYLDPNDQDVVDRIQSNVEGLYLIDGVPFSCCNPH----SPRPCLQSQLSDPY 234

  Fly   193 RHKV-------------GCLDGFSGYISAHAVSLGAAGVVIAILQFFGVIFACYIAREIKIRNGI 244
            .|.:             ||.:...|::...:.:||:...|..:||...::...|:...::...|:
  Rat   235 AHPLFDPRQPNLNLWAQGCHEVLVGHLQGLSGTLGSILAVTLLLQVLVLLGLRYLQTALEGLGGV 299

  Fly   245  244
              Rat   300  299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp29FaNP_523515.1 Tetraspanin 11..236 CDD:459767 50/250 (20%)
tetraspanin_LEL 126..201 CDD:351888 25/116 (22%)
Rom1NP_001009690.1 peripherin_like_LEL 128..264 CDD:239415 30/152 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 329..351
Blue background indicates that the domain is not in the aligned region.

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