DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp29Fa and Tspan7

DIOPT Version :9

Sequence 1:NP_001162915.1 Gene:Tsp29Fa / 34211 FlyBaseID:FBgn0032074 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_062608.2 Gene:Tspan7 / 21912 MGIID:1298407 Length:249 Species:Mus musculus


Alignment Length:235 Identity:63/235 - (26%)
Similarity:115/235 - (48%) Gaps:15/235 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VKYTLFGFNLIFLITGIILIAVGAGVGAVYTGYKLFLAGKFFSIPTFLIVIGSFIIIISFFGCWG 75
            :|..|..::.:|.|||:||:|||.........|...:|....:.|..||..|:.|::...|||:.
Mouse    15 LKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFA 79

  Fly    76 ALKENYCLVLSFSVMLAIIFILELAAGISGYVLRNDASDLIKTSLTYSLNEYNSINPNATTKLWD 140
            ..:.:..::..:::.|:::|:.||.|||||:|.|::..|....:.|.::..||  ..:..::..|
Mouse    80 TCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYN--GNDERSRAVD 142

  Fly   141 DIQDEFECCGVTSYNDWITA--FPNGDLPISCCNVHVGAVGTFTCN-----NAQSSVADRHKVGC 198
            .:|....||||.:|.:|.::  |.:..:|.|||      :....||     |...:....::.||
Mouse   143 HVQRSLSCCGVQNYTNWSSSPYFLDHGIPPSCC------MNETDCNPLDLHNLTVAATKVNQKGC 201

  Fly   199 LDGFSGYISAHAVSLGAAGVVIAILQFFGVIFACYIAREI 238
            .|..:.::..:...:......||..|..|::.||.::|.|
Mouse   202 YDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp29FaNP_001162915.1 Tetraspannin 11..238 CDD:278750 62/233 (27%)
tetraspanin_LEL 106..210 CDD:239401 25/110 (23%)
Tspan7NP_062608.2 Tetraspannin 15..237 CDD:395265 61/229 (27%)
TM4SF2_6_like_LEL 110..213 CDD:239414 25/110 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.770

Return to query results.
Submit another query.