DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp29Fa and Prph2

DIOPT Version :10

Sequence 1:NP_523515.1 Gene:Tsp29Fa / 34211 FlyBaseID:FBgn0032074 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_032964.1 Gene:Prph2 / 19133 MGIID:102791 Length:346 Species:Mus musculus


Alignment Length:305 Identity:61/305 - (20%)
Similarity:103/305 - (33%) Gaps:116/305 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LFGFNLIFLITGIILIAVGAGVGAVYTGYKLFLA------------GKFFSIPTFLIVIGSFIII 67
            |:..|.:.::.||:|.::|           |||.            .:...:|..||.:|....:
Mouse    20 LWLMNWLSVLAGIVLFSLG-----------LFLKIELRKRSEVMNNSESHFVPNSLIGVGVLSCV 73

  Fly    68 ISFFG---CWGA------------LKENYCLVLSFSVMLAIIFILELAAGISGYVLRNDASDLIK 117
            .:...   |:.|            ||....:.:.|:|   |:|::.|..    ::||..    ::
Mouse    74 FNSLAGKICYDALDPAKYAKWKPWLKPYLAVCIFFNV---ILFLVALCC----FLLRGS----LE 127

  Fly   118 TSLTYSLNEYNSINPNATT-------KLWDDIQDEFECCGVTSYNDW------------------ 157
            ::|.|.|........:..|       |..|.:|.||:|||...:.||                  
Mouse   128 STLAYGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSKEV 192

  Fly   158 ---ITAFPNG-----DLPISCCN-------VHVGAVGTFTCNNAQSSVADRHKV--------GCL 199
               |.:..:|     .:|.||||       :..    ..|.|:|..|.  .|:.        ||.
Mouse   193 KDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQY----QLTNNSAHYSY--DHQTEELNLWLRGCR 251

  Fly   200 DGFSGYISAHAVSLGAAGVVIAILQFFGVIFACYIAREIKIRNGI 244
            .....|.|:   .:.:.|||..::..|          |:.|..|:
Mouse   252 AALLNYYSS---LMNSMGVVTLLVWLF----------EVSITAGL 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp29FaNP_523515.1 Tetraspanin 11..236 CDD:459767 58/295 (20%)
tetraspanin_LEL 126..201 CDD:351888 25/122 (20%)
Prph2NP_032964.1 Tetraspanin 16..181 CDD:459767 38/182 (21%)
peripherin_like_LEL 120..262 CDD:239415 32/154 (21%)
Interaction with MREG. /evidence=ECO:0000269|PubMed:17260955 341..346
Blue background indicates that the domain is not in the aligned region.

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