DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp29Fa and tsp-20

DIOPT Version :10

Sequence 1:NP_523515.1 Gene:Tsp29Fa / 34211 FlyBaseID:FBgn0032074 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_510014.1 Gene:tsp-20 / 181376 WormBaseID:WBGene00006646 Length:279 Species:Caenorhabditis elegans


Alignment Length:265 Identity:56/265 - (21%)
Similarity:100/265 - (37%) Gaps:65/265 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TGSANAV--KYTLFGFNLIFLITGIILIAVGAGVGAVYTGYKLFLAGKFFSIPTFLIVIGS--FI 65
            :||.:..  |..|| .:.:.:|.||:.:|:...: .::.|..:.|....|.:....:.:|.  |.
 Worm    17 SGSCSGCCSKCQLF-ISYLLVIVGILFLALAIWL-YIFRGDLIPLIQSHFYVKCIYLAVGCGVFN 79

  Fly    66 IIISFFGCWGALKENYCLVLSFSVMLAIIFILELAAGISGYVLRNDASDLIKTSLTYS------- 123
            :||.|.  ..:...|.|.::.:.:||....|:|              ..||..:.:|.       
 Worm    80 VIIGFL--VHSAVSNRCALVFYLLMLIFSMIME--------------GCLIYFTFSYHATYEQEL 128

  Fly   124 --------LNEYNSINPNATTKLWDDIQDEFECCGVTSYNDWITAFPNGD--------------- 165
                    ||.|| ::|| ..|..:.:|.:.:|||..::|||    |..:               
 Worm   129 NASLPNDILNNYN-LDPN-IAKAVNYLQRDSKCCGSNAFNDW----PKPEVEDHYLPYAKTVVQR 187

  Fly   166 ---LPISCCNVHVGAVGTFTCNNAQSSVADRHKVGCLDGFSGYISAHAVSLGAAGVVIAILQFFG 227
               :|.|||.......|. ..:::.:::..|   |||......:..:...|........:|.|..
 Worm   188 VQYIPDSCCKSTHQRKGC-ALSDSPNNIFYR---GCLPFLKEEVYNNLNFLFTVTAASLVLHFAN 248

  Fly   228 VIFAC 232
            :||.|
 Worm   249 LIFGC 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp29FaNP_523515.1 Tetraspanin 11..236 CDD:459767 54/259 (21%)
tetraspanin_LEL 126..201 CDD:351888 22/92 (24%)
tsp-20NP_510014.1 Tetraspanin 25..257 CDD:459767 54/257 (21%)
CD151_like_LEL 118..231 CDD:239408 25/122 (20%)

Return to query results.
Submit another query.