DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp29Fa and cd53

DIOPT Version :9

Sequence 1:NP_001162915.1 Gene:Tsp29Fa / 34211 FlyBaseID:FBgn0032074 Length:248 Species:Drosophila melanogaster
Sequence 2:XP_002942834.1 Gene:cd53 / 100496085 XenbaseID:XB-GENE-868554 Length:228 Species:Xenopus tropicalis


Alignment Length:234 Identity:70/234 - (29%)
Similarity:115/234 - (49%) Gaps:25/234 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NAVKYTLFGFNLIFLITGIILIAVGA--GVGAVYTGYKLFLAGKFFSIPTFLIVIGSFIIIISFF 71
            |.:||.:|.||.:|.:||..:||:|.  .|..:|.  .|.......::...||.||..|::..|.
 Frog     7 NTLKYLMFAFNFLFWVTGCSIIAIGIYFVVNNIYG--DLLTNNPSLTVGNALIAIGIIIMVFGFL 69

  Fly    72 GCWGALKENYCLVLSFSVMLAIIFILELAAGISGYVLRNDASDLIKTSLTYSLNEYNSINPNATT 136
            ||.||:|||.||:|:|.::|.:|.:.|:...|..:|......:.::..||.|..:....|.:.| 
 Frog    70 GCMGAIKENKCLLLTFFILLLLILLAEVIMAILLFVYEKQLDNYVRDRLTSSFEQNLKQNSSET- 133

  Fly   137 KLWDDIQDEFECCGVTSYNDWITAFPNGDLPISCCNVHVGAVGTFTCNNAQSSVADRHKVGCLDG 201
              |:.||...:|||:....||....||     |||..:.         |::.|.||..|:||.:.
 Frog   134 --WNIIQRNLQCCGINGTKDWKDNIPN-----SCCASNA---------NSKCSQADLFKMGCSEA 182

  Fly   202 FSGYISAHAVSLGAAGVVIAILQFFGVIFA----CYIAR 236
            ...:...:.:.:|...:.|::::..|:.||    |:|:|
 Frog   183 LKNWFEKNFLYVGVGTICISVIEVLGMSFALTLYCHISR 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp29FaNP_001162915.1 Tetraspannin 11..238 CDD:278750 69/232 (30%)
tetraspanin_LEL 106..210 CDD:239401 26/103 (25%)
cd53XP_002942834.1 Tetraspannin 9..215 CDD:366035 66/224 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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