DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LManV and ams1

DIOPT Version :9

Sequence 1:NP_001285763.1 Gene:LManV / 34205 FlyBaseID:FBgn0032068 Length:982 Species:Drosophila melanogaster
Sequence 2:NP_593979.1 Gene:ams1 / 2543485 PomBaseID:SPAC513.05 Length:1077 Species:Schizosaccharomyces pombe


Alignment Length:864 Identity:180/864 - (20%)
Similarity:291/864 - (33%) Gaps:258/864 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LCVAFLALQAKSAQAVCGYESCHETKSNMINIHLVPHSHDDVGWLKTVDQYYYGHRNNIQHAGVQ 72
            |..|||.....|       |:..|..::..|:..:.|.|.|..||..    :...|..|..:.. 
pombe   259 LAKAFLGNDIDS-------EAVFEKNNDKANVFAIGHCHIDTAWLWP----FAETRRKIVRSWA- 311

  Fly    73 YIIDTVISELIKNPDRRFIQVETSFFSKWWNEQSETMRAVVKMLVNEGRLQFINGAWSMNDEAAV 137
                |.::.:.:.|:.:|:..:...: .|..|....:...:|..||:.:...|.|:|..:|....
pombe   312 ----TQMNIMDRYPEYQFVCSQALQY-LWLKEDHPDVFEKLKEYVNQNKFIPIGGSWVEHDTNIP 371

  Fly   138 NYQSVIDQFTVGLKFLDDTFGVCGRPRVGWQIDPFGHSREQASIYAQMGFDGEFFSRMDHND--- 199
            |.:|:|.||.:|..|.:..|||  |.|..|..|.||:|.:...|....|.|.....::..|:   
pombe   372 NGESLIRQFLLGQHFFEKEFGV--RCRTFWLPDTFGYSSQIPQICRLCGMDRFLTQKLSWNNINS 434

  Fly   200 -KGRRMNDLALE------------------MIWDASESLSQVKLF----TGLLYTFYWD-----T 236
             .....|.:||:                  .:.|...|:.|.|..    .|||.....|     |
pombe   435 FPTSTFNWVALDGSQVICHMPPANTYTADTNVNDVLHSIDQHKNLVNDQAGLLVFGIGDGGGGPT 499

  Fly   237 PGFCFDV-HCSDDPIIDSDSYDNNVK--SRVDDFIAYAAQVAEKFRTNHIMIPMGGDFQYEDAEV 298
            |.....: .|..  |.::..|..|||  :.||:|.   ..:.::......:....|:..:|....
pombe   500 PEMLEKLRRCKG--IANTVGYLPNVKLGNTVDEFF---DGILKRTNAGQTLPSWNGELYFEFHRG 559

  Fly   299 NYKNMDKLIKYVNERQSS--GSKYNIIYSTPTCYLNSVHKSVQSYPNKTL-------------DF 348
            .|....:|.|.:.:.:.:  .::|   .||    |.|:.....|||.::|             |.
pombe   560 TYTTQAELKKLMRKVEIALHDAEY---VST----LASIFSKDYSYPKESLQDLWRDTLLCQFHDV 617

  Fly   349 FPYGSDTNSFWTGYYTSRPTQKRFERDGNHILQVAKQLSAFAELSSTQQKEDLEYLR----EIMG 409
            .| ||.....   |..:.|...:..::...:|..|.:...|.:.||:..||.|..|.    .:.|
pombe   618 LP-GSCIEMV---YKDAIPIMSKVLKNTEALLWQAIEQLGFKKASSSDNKEQLCLLNTLPWNVRG 678

  Fly   410 VMQHHDAITGTEKQHVSDDYDRILYDAIVG-GVKTA---------------------GDALRKLT 452
            |      ||.||:..:      :.:::..| |:.||                     .|.|| :|
pombe   679 V------ITETEENKL------VYFESCDGKGILTAAHTSLKHPAAAYQKDDNFILVNDHLR-VT 730

  Fly   453 NLPNGEFESCLQLNISECAFTKDGADNVVVTLYNALAHT-TKQYV---RVPV----------KNE 503
            ..|||...|...|:          .:..::.|.:...|. ..|||   ..|:          ..|
pombe   731 IAPNGLILSLFDLH----------KEREILDLKSGKNHAGANQYVLFEDTPLSWQAWDTEVFSLE 785

  Fly   504 NYQVTDEKGRVVASEIVPVPAEVLALEFRDSDTQHELVFKASVDKIANYYIKKVDSKESSNGVRV 568
            .|:|.| ||:|...|..|:.|.|: ::...|:..|   .||::                      
pombe   786 KYEVLD-KGKVSIKESGPLRASVV-VDIPISELSH---MKATI---------------------- 823

  Fly   569 ISQPKANAETYDDEETIVQTSLIKLVLDNKTGLLKRVEMNGVSENIEQSYGLYRTYDSGAYVFRQ 633
                  :.|.|:|..                      |..||:...|..:     ::|..::   
pombe   824 ------SLEGYNDCS----------------------EFTGVNFTCEVDW-----HESCKFL--- 852

  Fly   634 YNQGDFVIQEDGVEFTVYDGALVKEVHQRFSEYISQVIRISEDKPYVEFEWLVGPIPV------- 691
                       .|||.|       ::|..|:.|.:| ..|::...:....|.|....|       
pombe   853 -----------KVEFPV-------DIHSEFASYETQ-FGITKRPTHYNTSWDVAKFEVCHQKFAD 898

  Fly   692 --EEEFGTEVVTIFSSEIASNGVFYTDSNGRELIR-------REKDKREDF---TPELAVQPTSG 744
              :..:|..|:         |...|..|....|:|       ::.|...|.   |...||.|.|.
pombe   899 YSDFTYGVSVL---------NDCKYGFSTHGNLMRLSLLRSPKQPDAHADMGKHTIRYAVYPHSK 954

  Fly   745 NYYPITSRIALQ-DSNKRL 762
            .....|.|.|.: :||.||
pombe   955 PLDSSTVRAAHKFNSNFRL 973

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LManVNP_001285763.1 GH38N_AMII_LAM_like 37..311 CDD:212121 68/307 (22%)
Alpha-mann_mid 358..433 CDD:286360 17/78 (22%)
Glyco_hydro_38C 481..977 CDD:285047 62/316 (20%)
ams1NP_593979.1 AMS1 44..1077 CDD:223460 180/864 (21%)
GH38N_AMII_ScAms1_like 282..538 CDD:212123 63/272 (23%)
Alpha-mann_mid 555..634 CDD:286360 19/89 (21%)
Glyco_hydro_38C 664..1073 CDD:285047 84/424 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 60 1.000 Domainoid score I3021
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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