DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LManV and man2b2

DIOPT Version :9

Sequence 1:NP_001285763.1 Gene:LManV / 34205 FlyBaseID:FBgn0032068 Length:982 Species:Drosophila melanogaster
Sequence 2:NP_001106515.1 Gene:man2b2 / 100127706 XenbaseID:XB-GENE-1006292 Length:990 Species:Xenopus tropicalis


Alignment Length:1096 Identity:294/1096 - (26%)
Similarity:473/1096 - (43%) Gaps:235/1096 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IVLCVAFLALQAKSAQAVCGYESCHETKSNMINIHLVPHSHDDVGWLKTVDQYYYGHRNNIQHAG 70
            :||..|:..:...|||.:..:              ::||||.||||:.||.:        ..||.
 Frog     5 LVLLSAWGCVCTHSAQPIQAF--------------VIPHSHMDVGWVYTVQE--------SMHAY 47

  Fly    71 VQYIIDTVISELIKNPDRRFIQVETSFFSKWW-----NEQSETMRAVVKMLVNEGRLQFINGAWS 130
            ...:..||:.||::...||||.||..||..||     |.:.:.    |..|:.||||:|:.|...
 Frog    48 AANVYTTVVEELMRGDRRRFIVVEQEFFRLWWKLFAGNVEKQQ----VHQLMREGRLEFVIGGQV 108

  Fly   131 MNDEAAVNYQSVIDQFTVGLKFLDDTFGVCGRPRVGWQIDPFGHSREQASIYAQMGFDGEFFSRM 195
            |:|||.......|.|.|.|..|:.:||||  |||..|.:||||.|....:::|..||:|...||:
 Frog   109 MHDEALTTIDDQILQLTEGHGFIYETFGV--RPRFSWHVDPFGASAASPTLFAMAGFNGHLISRI 171

  Fly   196 DHNDKGRRMNDLALEMIWDASESLS-QVKLFTGLLYTFYWDTP---------GFCFD-VHCSDDP 249
            |::.|....|...|:.||.||.||| :.::||.::..:.:.||         ||.:: :....||
 Frog   172 DYDTKADMQNGKELQFIWRASPSLSDKQEIFTHVMDQYSYCTPSYIPFSDRSGFYWNGIAVFPDP 236

  Fly   250 IIDSDSYDNNVKSRVDDFIAYAAQVAEK-------FRTNHIMIPMGGDFQYEDAEVNYKNMDKLI 307
            ..|....:.::....|....||..:.:.       ||::.::.|.|.|.|:.:|.|.:.|||.|:
 Frog   237 PKDGMYPNMSLPVTADTIHPYAETMVKNIKERAAWFRSSDVLWPWGCDKQFFNASVQFNNMDLLL 301

  Fly   308 KYVNERQSSGSKYNIIYSTPTCYLNSVHKSVQSYPNKTL--------DFFPYGSDTNSFWTGYYT 364
            .|:|:....|  ..:.|||...|..:::       |:.|        ||.||.||::..|||:||
 Frog   302 DYINKHTEFG--VTVQYSTLGDYFKNLY-------NRNLTWGLRGSQDFLPYSSDSSQAWTGFYT 357

  Fly   365 SRPTQKRFERDGNHILQVAKQLSAFAE---------LSSTQQKEDLEYLREIMGVMQHHDAITGT 420
            ||...|...|..:.:|..|:  ||||:         :......|.|..||..:..:||||.||||
 Frog   358 SRNVLKGVARRASSLLYAAE--SAFAQHLLKHPTGSVEKVWAMEQLRSLRWAVSEVQHHDGITGT 420

  Fly   421 EKQHVSDDYDRILYDAIVGGVKTAGDALRKL-----TNLPNGEFESCLQLNISECAFTKDGADNV 480
            |...|.|.|...|.....|        :|||     .:|.:.:..||             |...:
 Frog   421 ESPKVRDMYIANLLQGAAG--------VRKLMAAIVMDLYSSQANSC-------------GNGYI 464

  Fly   481 VVTLYNALAHTTKQYVRVPVKNENYQVTDEKGRVVASEIVPVPAEVL-ALEFRDSDTQHELVFKA 544
            .:|:||.||.....:|.||:.|....|.|:.|:       ||||::. |.|..::...|.||   
 Frog   465 NITVYNPLAWDVTTFVLVPMNNSVSGVYDKFGQ-------PVPAQIQNATEPSNAFDLHILV--- 519

  Fly   545 SVDKIANY--YIKKVDSKESSNG-------VRVISQPKANAETYDDEETIVQTSLIKLVLDNKTG 600
             ..|..:|  |..|:.|.:::|.       :..:.|||.|.....:..|.:......:|:|..|.
 Frog   520 -TLKGLSYGRYSIKLGSCDAANDRLVTGRKITFVRQPKRNKAKRQNLVTPIMNDCYTVVIDQNTN 583

  Fly   601 LLKRVEMNGVSENIEQSYGLYRTYDSG---------AYVFRQYNQGDFVIQEDGVEFTVYDGALV 656
            ||..:.....::.::.:......:.:|         .|:|.  :.|..:.....|...:..|.||
 Frog   584 LLHSITARESNQTVQVTQEFLEYHSNGDISKGPISDNYLFT--STGPAISAYKAVGLEIIAGKLV 646

  Fly   657 KEVHQRFSEYI----------SQVIRISE--DKP----YVEFEWLVGPIPVEEEFGTEVVTIFSS 705
            .|:.|.|...|          |::..:.|  ||.    ::|..:.|||:    :...|.:...|:
 Frog   647 TEIRQYFYSNITAQTYLYAVYSRIYNVPEGYDKSLVCHHIEQSYRVGPM----DLNRESIIRTST 707

  Fly   706 EIASNGVFYTDSNGRELIRREKDKREDFTPELAVQPTSGNYYPITSRIALQDSNKRLAILNDRAQ 770
            ::.::.:.|||:||.::.||:....:..|       .:.||||:.....::|::.||..|::||.
 Frog   708 DLRTDRLIYTDNNGYQMQRRQFKNYDTNT-------VARNYYPMVRTAYIEDNSTRLVFLSERAH 765

  Fly   771 GGTSMKDGQIELMLHRRLVR----DDGYGVGEALNEEKYGQPLI--------ARGKVFLILNAAD 823
            |.:|..:|::|:||||||..    |..|.:  .||:....:|.|        ..|.::..|..|.
 Frog   766 GVSSQDNGEVEIMLHRRLWNNLEWDLNYNL--TLNDTSVVRPTIWLMLGSRALAGALYQRLGMAL 828

  Fly   824 ESTSAEREAEKEFHLPLWKFFSKNTGSTTAAAKSVPSFDDFPKSVHLLTL------------EPF 876
            |            |.|| ..:|.:||....:.|:.......|.::||..|            |..
 Frog   829 E------------HRPL-VIYSLHTGQEKRSYKTTDLPITLPDNIHLQILSIPGWFYSSRHHEHM 880

  Fly   877 ND-------------DEILLRVENF----KDHIEGKVVSFNIRPIFDYLNGVE-IRETTLDGNLP 923
            .|             ..:|||:::.    :|.:..|.|:.|::.:...|..|. :.|.:|.|...
 Frog   881 QDIHTGNIRDNVADFHRVLLRLQHLYETNEDPVLSKPVTINLQSLLKGLGTVSLVEERSLTGTWD 945

  Fly   924 LSDMKQFKFHAEGSGIRGSEPEYYTSSHKPLSANQTQDAAEFAVTLYPMQIRTFII 979
            :..:|::|:.|   .|:|::...:|..           .::|.:||.|.:|||..:
 Frog   946 IHTLKRWKWKA---NIKGTDQREHTLG-----------TSDFTITLSPKEIRTLFV 987

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LManVNP_001285763.1 GH38N_AMII_LAM_like 37..311 CDD:212121 99/296 (33%)
Alpha-mann_mid 358..433 CDD:286360 31/83 (37%)
Glyco_hydro_38C 481..977 CDD:285047 134/572 (23%)
man2b2NP_001106515.1 GH38N_AMII_Epman_like 22..346 CDD:212122 111/360 (31%)
Alpha-mann_mid 352..433 CDD:214875 31/82 (38%)
Glyco_hydro_38C 567..985 CDD:285047 103/459 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D201312at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11607
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

Return to query results.
Submit another query.