DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LManIV and Man2b1

DIOPT Version :9

Sequence 1:NP_609251.2 Gene:LManIV / 34204 FlyBaseID:FBgn0032067 Length:978 Species:Drosophila melanogaster
Sequence 2:XP_006255335.1 Gene:Man2b1 / 361378 RGDID:3039 Length:1021 Species:Rattus norvegicus


Alignment Length:1025 Identity:406/1025 - (39%)
Similarity:577/1025 - (56%) Gaps:92/1025 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ILFLSILL-VLFAKQSEAVCGYESCPETKANMVNIHLVPHSHNDVGWLKTVDQSYYG-------- 62
            :|.:|.|: :|.|.......||::||.||..|:|:||:||:|:||||||||||.|||        
  Rat    31 VLSISFLIWLLLAAPGAQAAGYKTCPTTKPGMLNVHLLPHTHDDVGWLKTVDQYYYGMDPHLLTF 95

  Fly    63 ---YKNKIHHAGVQYILDSVVSQLLQDPKRRFIQVETAFFAKWWNVQSESMKKVVTKLVNEGRFE 124
               ..:.:.||.||||||||:..||.||.||||.||.|||::||..|:...:..|..||.:||.|
  Rat    96 MPIVMSDVQHASVQYILDSVIYSLLNDPTRRFIYVEMAFFSRWWKQQTNVTQDAVRNLVRQGRLE 160

  Fly   125 FTGGAWSMNDEANVNYQGVIDQFTVGLKFLNETFGSCGRPRVGWQIDTFGHSREQAAIFAHMGYD 189
            |..|.|.|||||..:|..::||.|:||:||.:||||.|.|||.|.||.||||||||::||.||:|
  Rat   161 FVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSDGLPRVAWHIDPFGHSREQASLFAQMGFD 225

  Fly   190 GQFFSRMDHNDKDTRMNDLTMEMIWDASESMS--GVSLFSGMLYNFYSDTPGFCFDILCTDQPII 252
            |.|..|:|:.||..|...|.||.:|.||.|:.  ...||:|:|.|.|:.....|:|:||||.|::
  Rat   226 GFFLGRIDYQDKFNRKRKLKMEELWRASASLKPPAADLFTGVLPNNYNPPKDLCWDVLCTDPPVV 290

  Fly   253 DG-DSEENNVKQRVDDFISYAKNVSEVYITNHIMVPMGGDFQYEDAKVNYKNMDKLIKYINE-RQ 315
            |. .|.|.|..:.||.|::.|.:..:.|.|||.::.||.|||||:|.:.:|||||||:.:|| :|
  Rat   291 DDPTSPEFNANKLVDYFLNLASSQKKYYRTNHTVMTMGSDFQYENANMWFKNMDKLIRLVNEQQQ 355

  Fly   316 ASGSKYNIFYSTPSCYLNSLHQSLESWPNKTQDFFPYAHEKNSFWTGFFTSRPTQKRFERDGNHM 380
            |:|||.::.||||||||..|:::..:|..|..||||||...:.||||:|:|||..||:||...:.
  Rat   356 ANGSKVHVLYSTPSCYLWELNKANLTWTVKEDDFFPYADGPHMFWTGYFSSRPALKRYERLSYNF 420

  Fly   381 LQVAKQLSVLANLTSEEHKI------DLDYLRQVMGVMQHHDAITGTEKQAVSDDYDRMM----- 434
            |||..||..   |...|.|:      |...|.:.|.|:|||||:|||.:|.|.:||.:.:     
  Rat   421 LQVCNQLEA---LVGPEAKVGPYGSGDSAPLNEAMAVLQHHDAVTGTARQNVVNDYAKQLAAGWG 482

  Fly   435 -YEAIVGASNNARDALRLLTNMPYGEFESCLRLNISECAFTKDGADNVLVTLYNPLAHSSTQYVR 498
             .|.:|   :||...|.|...    .|..|..:|||.|..::. :::..|.:|||:.......||
  Rat   483 PCEVLV---SNALARLSLYKQ----NFSFCREINISICPASQT-SEHFRVIIYNPVGRKVDLMVR 539

  Fly   499 IPVKEENYQVTDEKGRTVPSEVVPVPWQVLALEYRSNDTQHELVFKATVNKV--SSYSIKKVESS 561
            :||.|..:.|.|...|.:.|.||.||      ...|...|.||:|.|:|..:  |.||:.|:...
  Rat   540 LPVSEGIFLVKDPNDRRISSNVVMVP------SAYSKTYQWELLFPASVPALGFSIYSVNKMSGH 598

  Fly   562 EVKHSSIKKINPREDNNSETVVENSVVKLVMDNHTGRLKSVE--MNGVSEKIVQNFGVYKS---- 620
            ..:..:: ...|::..:...|:||..::...|:.||.|:.:|  ...:|..:.|.|..|.:    
  Rat   599 NHQAHNL-TARPKKSKSRVLVIENKYIRATFDSDTGLLRKIENLEQNISLPVRQGFFWYNASAGD 662

  Fly   621 ----HTSCAYTFRQDGDIELFENDF-EFTVYEGSLVKEVHQHVNDWISQVIRIYEGVSRVELEWM 680
                ..|.||.||......|..:.: :.|:.:.:||:||||:.:.|.|||||:|||...:||||.
  Rat   663 EESPQASGAYIFRPSHRKPLPVSHWAQVTLVKTNLVQEVHQNFSAWCSQVIRLYEGQRHLELEWT 727

  Fly   681 VGPIPIDDKLGSEFVTNFKSEISSNGVFYTDSNGRELMKRVKDKREDFVSDLSRQPVSGNFYPVT 745
            |||||:.|..|.|.::.|.:.:.:.|.|:|||||||::||..|.|..:..: ..:||:||:|||.
  Rat   728 VGPIPVKDDWGKEVISRFNTPMRTRGQFFTDSNGREILKRRDDFRPTWTLN-QTEPVAGNYYPVN 791

  Fly   746 SRIALQDDTKRLVLLNDRSQGGASLEDGALEMLIHRRHLFNDGGGVGEALNETQYGKGLIARGKL 810
            :||.:.|...:|.:|.||||||:||.||:||:::|||.|.:|..||.|.|.||..|..:  ||:.
  Rat   792 TRIYITDGHMQLTVLTDRSQGGSSLLDGSLELMVHRRLLVDDERGVAEPLLETDTGDKV--RGRH 854

  Fly   811 YLILDSATDGDTVTERKTEKELFLPFWKFFSKTGGVEITPSKSLPDF------NDLPQSVHLLTL 869
            .:||.|.:|.........|:|:..|  :.....||.....|:: |..      .:||..||||||
  Rat   855 LVILSSVSDAAARHRLLAEQEVLAP--QVVLAHGGSSPYHSQA-PKMQFSALRRELPPQVHLLTL 916

  Fly   870 EFFSEQEILIRFEH-FLDKSEGR-----VISFNIRDIFDSLGGLAIRETTLDGNMPLSDMKRFKF 928
            ..:..:.:|:|.|| |..|.:..     .::.|::::|.:.....::||||..|.|||.:.|.|:
  Rat   917 ARWGPKMLLLRLEHQFAVKEDSNRNLSSPVTLNLQNLFKTFTINYLQETTLAANQPLSRVSRLKW 981

  Fly   929 HAQESGTKPSSVEYSTAQHKPLEAVKSDEASLFAVTLYPMQIRTFIIKTE 978
            .     |....:.|....       :.|..|   :||.|||||||:...:
  Rat   982 M-----TDTGPISYPAPS-------RLDPTS---ITLQPMQIRTFLASVQ 1016

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LManIVNP_609251.2 GH38N_AMII_LAM_like 39..312 CDD:212121 145/286 (51%)
Alpha-mann_mid 359..434 CDD:214875 36/80 (45%)
Glyco_hydro_38C 483..973 CDD:285047 175/514 (34%)
Man2b1XP_006255335.1 GH38N_AMII_LAM_like 63..351 CDD:212121 145/287 (51%)
Alpha-mann_mid 399..477 CDD:214875 36/80 (45%)
Glyco_hydro_38C 617..1011 CDD:285047 146/414 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341784
Domainoid 1 1.000 85 1.000 Domainoid score I7978
eggNOG 1 0.900 - - E1_KOG1959
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 809 1.000 Inparanoid score I460
OMA 1 1.010 - - QHG55625
OrthoDB 1 1.010 - - D201312at2759
OrthoFinder 1 1.000 - - FOG0001724
OrthoInspector 1 1.000 - - otm44691
orthoMCL 1 0.900 - - OOG6_101099
Panther 1 1.100 - - O PTHR11607
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1279
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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