DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LManIII and alpha-Man-IIb

DIOPT Version :9

Sequence 1:NP_001285762.1 Gene:LManIII / 34203 FlyBaseID:FBgn0032066 Length:1003 Species:Drosophila melanogaster
Sequence 2:NP_001262614.1 Gene:alpha-Man-IIb / 41913 FlyBaseID:FBgn0026616 Length:1249 Species:Drosophila melanogaster


Alignment Length:1159 Identity:279/1159 - (24%)
Similarity:461/1159 - (39%) Gaps:282/1159 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 INIHLVPHSHDDLGWLKTVDQYYYGNKHNIQHAGVQYIFDTVVAELSKDSRRRFIQVETGFFAKW 101
            :.|.:|||||:|.|||||...|:..:.        :.|.:.:|.::.:.:...||..|..|...|
  Fly   168 LKIIVVPHSHNDPGWLKTFTNYFQSDS--------RQILNLLVTKMQEYTDMTFIWSEISFLQLW 224

  Fly   102 WEDQSETKKKLVKTLVNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVCGRPRVG 166
            |:....||::.:|.|::.||:|.|.|.|.|.|||.|:...::||...|.::|.:|..|  .|:||
  Fly   225 WDQAHPTKQRALKRLIDAGRIEITTGGWVMTDEANVHIYPMLDQLIEGHQWLKNNLNV--TPKVG 287

  Fly   167 WQIDAFGHSREQASMFAQMAFDG-----------QFFARMDQNDKNKRVDNLGLEMVWDAS-ETL 219
            |.||.|||......:.:...|:|           |:|||....|           .:|... .:.
  Fly   288 WSIDPFGHGSTVPYLLSGANFEGTIIQRIHYAWKQWFARQQSGD-----------FIWKPYWRSR 341

  Fly   220 EEMDFFTGMLYNH------YSAPPGFC----FDSLCQDDPIIDGK--SY--------DNNVKSRV 264
            ::.|...|.|..|      ||. .|.|    |..|..|...|.|:  .|        |:|::|:.
  Fly   342 KDKDSEAGSLLTHNMPFDIYSI-KGSCGPHPFICLNFDFRKIPGEYTEYSVKAQFITDDNLESKA 405

  Fly   265 DDFLNYASNLAGYYRSNHIMVPMGDDFQY------ENAYMNYKNMDKLIKYVNERQASGSKYN-- 321
            ...|...:..|..:..|..::|:||||:|      :..|.|||   |||.::   .|:...||  
  Fly   406 QLLLEQYARTASLFPHNVALIPVGDDFRYNKDREVDQQYQNYK---KLIDHI---MANRRLYNAD 464

  Fly   322 IFYSTAGCYLNSLHKSLQ----SFPNKTQDFLPHS---HEAK-SFWTGFFTSRPTQKRFERDGNH 378
            |.:.|...|..::.:.::    .||....||..:|   .|.: ::|:|:||:||..|....:..|
  Fly   465 IRFGTPSDYFEAIKERMKDHTPGFPTFKGDFFVYSDIFSEGRPAYWSGYFTTRPFYKLLSSELEH 529

  Fly   379 ILQVAKQLSVLADLSG------------EEQHKDLDYLRQIMAVMQHHDAITGTEKQEVSNDYDR 431
            .|:.|:.:..||..:.            |:.::.:...|:.:.:.|||||||||.|..|..||..
  Fly   530 QLRSAEIVFTLAYNTARQAKRENAIKIYEKNYELIINARRNLGLFQHHDAITGTSKAAVMRDYAM 594

  Fly   432 LLYDAILGGANTARDALRVLTNQPNGEFQSCLKLNISECAFTK---------ENADDFMVT---- 483
            .|:::...........|.:|..:........|........|.|         .|.|:...|    
  Fly   595 RLFESTQNMVKMQESCLELLLQKGQPRHHGFLLSEFERDNFNKLPRKMPIQMANGDESTPTVPAG 659

  Fly   484 -----------------LYNPLAHTSTQYVRVPVKEDSYQVTDEKG-GLVASELVPVPWEVLSL- 529
                             |||.||....:.|.:.|:..:.::.::|| .|...::.|| |.:... 
  Fly   660 EGGAGGSSSSGSVGSFVLYNSLAQKRLEVVTLRVQHPNVKIVNDKGVELNHIQINPV-WNITDTY 723

  Fly   530 -------------EFRNNDTQHELVFKASVN--KIATYFIKKIDKTTEVDITVNTQT---EQSVN 576
                         ..|.:..|.|::|.|.:.  .::||.: ::|   ||:...|..|   :....
  Fly   724 EQGLGTSVSGTVGRIRTSTRQFEVMFVAELEPLSLSTYRV-QVD---EVNFKRNIATIYCDDCTE 784

  Fly   577 EEESNVKVPKRFKKVHSLKTDLETLDDQETIVQNSLIKLVIDNNTGRLKTVEMNGVSEDI----- 636
            .:.::|..|:..:...:...:.......:..::|..::|:.|..:|.|||:......:::     
  Fly   785 SQPASVSPPEEIESSPTSVFEARGKPAGDIQLENPHMRLLFDEKSGFLKTITRKNQKKELLKPLQ 849

  Fly   637 -DQTFGMYKTAR--SCHYIFRQD-----ADLELVEDAFDFTVY--DGESVKEVHQHVNEWISQVI 691
             :..|..|::|:  |..|:|:.|     |:.|::|...|..:.  .|....:|......:::..:
  Fly   850 CNIKFAAYRSAQFHSGAYLFKTDPEQSEAEKEVLEGYTDMRIIITSGPIASDVTVIYGPFLAHTV 914

  Fly   692 RIYEG----------VNRVEFEWLVGPVPIDDELGKEIVTIFKSGISSGG--------------- 731
            ||:..          .|.::||    |.|.:.|  .|:...|.:.|.:..               
  Fly   915 RIFNTRTHLDAAIYVENDIDFE----PPPKNRE--TELFMRFVTNIDNIAQAPMQRDPLKEPVDA 973

  Fly   732 -------VFYTDSNGREMMRREKDKREDFSPDLSEQPVSGNYYPVTSRMALQDSSKRMVLLNDRS 789
                   |||:|.||.:...|.|      .|.:.   :.|||:|:||...:|||..|:.||...:
  Fly   974 ATMPELPVFYSDQNGFQYHERIK------VPAIG---IEGNYFPITSGAFIQDSRLRLTLLTTHA 1029

  Fly   790 QGGASLEDGRLEMMLHRRHIFADGSGAAEAINEQQFGKGLIARGKLFLYLNAIEDGATASERVAE 854
            ||.||.|.|:||:||.||.::.|..|..|.:.:.:     :.|.|.:|.:..:..|...::.   
  Fly  1030 QGAASYEPGQLEVMLDRRTLYDDYRGMGEGVVDSR-----LTRHKFWLLVEDLPGGQHVTQP--- 1086

  Fly   855 KEIHLPFWKFFSK------------------SNNIQSDVTKTLSDF------NDLPQSVHLLTLE 895
                 |.:|..|:                  ||..|.::...|...      ..||..|||.||.
  Fly  1087 -----PSYKVLSQQAQQLANALRYPPNLYFVSNLEQPELAAALLPLVRLLPKGPLPCDVHLTTLR 1146

  Fly   896 PYSKDEILLRLENFLDQTEGNVVSFSIRQIFD---DLGGLEIRETTLDGNLPLS-------DMKR 950
            ..|..|:.|       ....:.:....||.||   ..|    ||.:::...|||       .:.|
  Fly  1147 TLSDPELQL-------FPSASALLVLHRQGFDCSVSAG----RELSMEAICPLSSKGLGNVQLGR 1200

  Fly   951 LKFHH------DGSGPSHSVPEYFTSLHKPLAADKTQDASEFSVTLKPMQIRTF 998
            |..|.      .|:....|...|..   :.||          .::|:||::|||
  Fly  1201 LSLHTIEATSLTGTEQKSSRESYHI---RSLA----------EISLEPMELRTF 1241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LManIIINP_001285762.1 GH38N_AMII_LAM_like 37..311 CDD:212121 92/311 (30%)
Alpha-mann_mid 358..433 CDD:286360 27/86 (31%)
Glyco_hydro_38C 603..998 CDD:285047 110/481 (23%)
alpha-Man-IIbNP_001262614.1 PLN02701 148..1246 CDD:178304 279/1159 (24%)
GH38N_AMII_GMII_SfManIII_like 167..514 CDD:212120 106/373 (28%)
Alpha-mann_mid 508..596 CDD:286360 27/87 (31%)
Glyco_hydro_38C 813..1241 CDD:285047 110/479 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450132
Domainoid 1 1.000 50 1.000 Domainoid score I680
eggNOG 1 0.900 - - E1_KOG1959
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 49 1.000 Inparanoid score I462
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.790

Return to query results.
Submit another query.