DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Glt and dmd.3

DIOPT Version :9

Sequence 1:NP_001245946.1 Gene:Glt / 34193 FlyBaseID:FBgn0001114 Length:1026 Species:Drosophila melanogaster
Sequence 2:XP_031752861.1 Gene:dmd.3 / 105946662 XenbaseID:XB-GENE-5813243 Length:3683 Species:Xenopus tropicalis


Alignment Length:1005 Identity:180/1005 - (17%)
Similarity:309/1005 - (30%) Gaps:355/1005 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 LSDLQLALEW-----------------------LQRNVVHFGG--NAGQVTL------------- 242
            ||||.  .||                       ||.|:.||..  |..::.|             
 Frog  2092 LSDLN--FEWENVNKLYKDRQMKHDRCMEKWMTLQDNMNHFNHWLNEAELILSDIPGDGKDSEKF 2154

  Fly   243 ----------VGQAGGATLAHALSLSGRAGNLFQQLILQSGTALNPYLIDNQPLDTLSTFARLAR 297
                      :||.  .|...||::||      .::|.||.......:.|.  |::|::...:..
 Frog  2155 KHQVKELEDGIGQQ--QTFVRALNVSG------GEIISQSSPTETADIRDK--LESLNSRWHIVN 2209

  Fly   298 CPPPSINPSAQGL----KPLY----------------DCLARLPTS-----QLVAAF-------E 330
               ..||...:.|    |.||                :.:||.||.     ||...:       |
 Frog  2210 ---RKINERRRRLEEEKKKLYGLQEDLNKFCIWLEDAEGIARQPTEPGNELQLNELYEKVKFTAE 2271

  Fly   331 QLLLQNEHL-GLTQLGGFKLVVGDPLGFLPSHPASLATNSSLALPMIIGATKDASAFIVSRIYDQ 394
            :||.:.|.| .|.:.||..|   ......|.....:.:....|....|..:||        ::| 
 Frog  2272 ELLPRKEFLKQLNEAGGTAL---GSTTISPKEKKKIESGLKEANQRWIKVSKD--------LHD- 2324

  Fly   395 LARLQSRNVSDYIDVVLRHTAPPSEHRLWKQWALREIFTPIQEQTASLQTVA-PG---LLELSNY 455
                :.:.:.|.:..:.......::..||        .:.:::|......|. ||   :.|....
 Frog  2325 ----KQKEIEDELKNLSLFELQLNQLTLW--------VSSVKDQLQFYNQVGRPGAFDIKETEEA 2377

  Fly   456 ILYRAPVINSI-SQSYRSVPAYLYTFDYRGEHHRFGHLSNPLPFGVDASLSDDSVYLFPYPPEAS 519
            ||.:.|.:..| |:.:     :|||             ..|.|:.:...|.|             
 Frog  2378 ILAKQPHVEGILSKGH-----HLYT-------------KEPAPYVLKQKLDD------------- 2411

  Fly   520 RLNPLDRSLSRALVTMW--VNFATTGVPNPSSGVWPQATSEYGPFLRFTNNQQSPLELDPHFGEG 582
                        |.|.|  ||                        |.....::.|....|..|:.
 Frog  2412 ------------LQTEWNTVN------------------------LLLQELKRRPAVAAPGGGQT 2440

  Fly   583 IYLPNYRVIYKPTTNFSPPITTTTTTTTTTTTTSRPYAY---NPYANWQNRPSQQHPNW------ 638
            :.:                :|.|..|.:|..:...|.:.   .|.....||...:..:|      
 Frog  2441 VSV----------------VTQTLVTGSTVPSADMPSSLLLEVPALAEFNRTCAELTDWLTLLDR 2489

  Fly   639 -------HPADPEYVRAQEARQQEFIREREQRR--------REQQLRDQQRYPQQEPREQQDERI 688
                   ...|.|.:.....:|:..:::.|:||        ..|.|:::...|  |.|....:||
 Frog  2490 VLKAQIVTVGDVEEINEMIIKQKTTLQDLEKRRPHLEERITAAQNLKNKTSNP--EARAVITDRI 2552

  Fly   689 RQQREQEERLRQQREQEERLRQQRELEER---IRQQQEREQYEREQQEREQRER------EELER 744
            .:.:.|.|.: |...|..||:.|..|::.   |..:.|.:|...:.:.|....:      |.|:.
 Frog  2553 DKIQNQWEEV-QCHLQNRRLQLQEMLKDSNQWIEARHEADQVIEKAKNRTDSWKEISYTVEALKN 2616

  Fly   745 QQREREQQQPE-QQPEYNPEPVNPWGYPVQEPQPDDNPEDGRLPYPSYEQYGPEGNENLPETDAN 808
            |..:.:|...| ||.:.|.:..|.....:......|:.....|.           .:|:..|.|.
 Frog  2617 QNSDLKQFSKELQQWQINVDAANDLALKLLRDYSTDDTRKVELM-----------KDNINATWAR 2670

  Fly   809 RNFSEEDREQQQQEQLRREQQEQQEREYQLQLER-------------------------EQQERE 848
            .|....:|:...:..||..||      :.|.||:                         |.....
 Frog  2671 INKRVTERDAALEAALRLLQQ------FYLDLEKFLAWLTEAETTANVLQDATHKDGVLEDTRGL 2729

  Fly   849 QQERGQQEPGPEEYPSYEEYSRALQE---------------------------------KNAERD 880
            ::...|.:...||...:.|...:|.|                                 |.:...
 Frog  2730 RELMNQWQNLQEEIDGHTEVFHSLDENGQKMLRSLEGSDDGVLLQRRLDNMNIRWNELRKKSLNI 2794

  Fly   881 RIYAEEQERERQQQETLLQE--------NQQHPEQS-----LPEEQPTHPNYEAY---------- 922
            |.:.|......::....|||        |::..:|:     :|:.|....|:.|:          
 Frog  2795 RSHLEASTEHWKRLHVSLQELLAWLQMKNEELKQQAPIGGDVPKVQTQIENHRAFKREIKTKEPV 2859

  Fly   923 -----DGDRSYAEEQEREQQRRDQVEQEREEQPDEDQGEEYER---SPDEEEAAEQDVLKVEDFP 979
                 |..|.:.::|..|...|  :.||.:|...|:|.....|   ...::.:.|.|.|.:....
 Frog  2860 IMNAIDTVRIFLDDQPSETMER--MHQEPKEAQTEEQFRNISRVLQKQVDDVSTEWDKLNLRSTD 2922

  Fly   980 SYEAYLEAATKLREEQEEQEKLEEERYRAQ 1009
            ..:...||..:|:|.||..::|:.:.::|:
 Frog  2923 WQKKLDEALQRLQELQEAMDELDHKLHQAE 2952

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GltNP_001245946.1 COesterase 55..579 CDD:278561 81/450 (18%)
Aes <146..345 CDD:223730 44/209 (21%)
RILP-like <677..>717 CDD:304877 12/39 (31%)
dmd.3XP_031752861.1 CH_DMD_rpt1 28..138 CDD:409080
CH_DMD_rpt2 153..262 CDD:409082
SPEC 357..574 CDD:238103
SPEC 479..684 CDD:238103
SPEC 739..950 CDD:238103
SPEC 957..1166 CDD:238103
SPEC 1064..1277 CDD:238103
Smc 1145..1974 CDD:224117
SPEC 1176..1383 CDD:238103
SPEC 2040..2213 CDD:238103 26/135 (19%)
SPEC 2229..2429 CDD:413338 47/290 (16%)
SPEC 2470..2678 CDD:238103 43/221 (19%)
SPEC 2690..2931 CDD:238103 39/248 (16%)
Spectrin 2932..3038 CDD:395348 6/21 (29%)
WW 3057..3086 CDD:238122
EFh_DMD 3124..3284 CDD:320004
ZZ_dystrophin 3309..3357 CDD:239074
Smc <3433..>3603 CDD:224117
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165162478
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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