DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema1a and sema3fb

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:XP_009304469.2 Gene:sema3fb / 799945 ZFINID:ZDB-GENE-050513-2 Length:791 Species:Danio rerio


Alignment Length:712 Identity:202/712 - (28%)
Similarity:323/712 - (45%) Gaps:179/712 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 W-MQVFLLLTV--LVIGNQSAWQENIRPKLYVEL------GPEDVLKFVGNESVVDHFKL-VTKD 103
            | :||.|:|:|  ||:||:   .:| .|::::..      |......|:.|.|  |:..| :.:|
Zfish     7 WPVQVLLVLSVLTLVLGNE---PQN-APRVFLSFKDLRSTGTAHYFSFLLNTS--DYRILRMDED 65

  Fly   104 GNSLLIGARNTVFNLSIHDLVEQQRLV-W-TSPEDDTKMCLVKGKDEEA-CQNYIRIMVVPSPGR 165
            .:.:.:|:::.:.:|.:||:..:..:: | .||:..|: |::.|||... |.|:||::...:...
Zfish    66 HDRMYVGSKDYILSLDLHDINREPLIIHWPVSPQRKTE-CVLSGKDTNGECGNFIRLIEPWNRTH 129

  Fly   166 LFVCGTNSFRPMCNTYI-----------------------------------ISDSNYTLEATK- 194
            |::|||.::.|:| ||:                                   :.:..:.||..| 
Zfish   130 LYICGTGAYNPVC-TYVNRGRKPMTAMHLQMPQTRGRASRAAEPETVFDETGLQEYVFHLEPGKE 193

  Fly   195 -NGQAVCPYDPRHNSTSVLADNELYSGTVADFSGSDPIIYR-----EPLQTEQYDSLSLNAPNFV 253
             :|:..|||||:.||.|.|.:.|||:|...||.|:|..|:|     ..::|:||:|..||.|:||
Zfish   194 DSGKGKCPYDPKLNSVSALINGELYAGVYIDFMGTDSAIFRTLGKNAVMRTDQYNSRWLNDPSFV 258

  Fly   254 -------SSFTQGDFVYFFFRETAVEFINCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLN 311
                   |.....|.:||||||.:.|.....|: .||:.|:|..|.||.....|:|::|||:||.
Zfish   259 HVHLIPDSGEKNDDKLYFFFREKSSEMGQSPKS-QSRIGRICLNDDGGHCCLVNKWSTFLKARLI 322

  Fly   312 CSIPG--DYPFYFNEI--------QSASNLVEGQYGSMSSKLIYGVFNTPSNSIPGSAVCAFALQ 366
            ||:||  ....:|:|:        |...|.|           |||||:...:...|||||.:::.
Zfish   323 CSVPGADGIETHFDELRDVYIQPTQDTKNPV-----------IYGVFSVSGSVFKGSAVCVYSMA 376

  Fly   367 DIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSC--------HNDSRALPDPTLNFIKTHSLM 423
            ||...|.|.|..:.|.|..|: ....|:|.||||:|        ...::..||..:||::.|..|
Zfish   377 DIRMVFNGPFAHKEGPNYQWV-AYTGKIPYPRPGTCPGGTFTPNMKSTKDYPDEVINFMRNHPTM 440

  Fly   424 DENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPGGKTYDVIFVGTDHGKIIKSVNAESADSADK 488
            ..:|.....:|::|||:..|.||.|.|| |:....| .|:|:|:|||.|.:.|.:...|.|.  :
Zfish   441 YNSVYPVHKRPLVVRTNVDYEFTTITVD-QVTAADG-NYEVLFLGTDKGTVQKVIVLPSDDL--Q 501

  Fly   489 VTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKDGSYDDGKLIIVTDSQVVAIQLHRC--HNDKI 551
            ...:|:||::|......|..::|....|            :|.:.:...|..:.||||  :.:  
Zfish   502 TEELVLEEVEVFKVPTSITTMKISSKRQ------------QLYVASAVGVTHMALHRCDVYGE-- 552

  Fly   552 TSCSECVALQDPYCAWDKIAGK-CRSHGAPRWLEENYFYQNVATGQHAACPSGKINSKDANAG-- 613
             :|::|...:|||||||   || |..:.|                .....|..:...:|...|  
Zfish   553 -ACADCCLARDPYCAWD---GKSCSRYSA----------------SQKRLPFRRSRRQDVKYGNP 597

  Fly   614 --EQKGFRNDMDLLDSRRQSKDQEIIDNIDKNFEGPQISADIINAQYTVETLVMAVLAGSIF 673
              :.:|:.:                  ||:||               |:||:...|...|.|
Zfish   598 IRQCRGYNS------------------NINKN---------------TLETVQYGVEGSSTF 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 158/525 (30%)
PSI 545..>579 CDD:214655 14/36 (39%)
sema3fbXP_009304469.2 Sema_3F 48..547 CDD:200515 160/531 (30%)
PSI 546..>582 CDD:214655 15/57 (26%)
Ig_Semaphorin_classIII 612..700 CDD:143279 6/15 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.