DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and sema4e

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_001077334.1 Gene:sema4e / 796377 ZFINID:ZDB-GENE-990715-7 Length:766 Species:Danio rerio


Alignment Length:688 Identity:202/688 - (29%)
Similarity:322/688 - (46%) Gaps:127/688 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 LVTKDGNSLLIGARNTVFNLSIHDL-VEQQRLVWTSPEDDTKMCLVKGKD-EEACQNYIRIMVVP 161
            |:..|.|.|::|||..:|.|.:.|: :::..|.|....|....|..|||| ...|:|||||:...
Zfish    57 LLRDDLNLLILGAREAIFALDLDDITIKKAMLKWEVTRDQQNDCSNKGKDATNDCKNYIRILHKK 121

  Fly   162 SPGRLFVCGTNSFRPMCNTYIISDSNYTLE-ATKNGQAVCPYDPRHNSTSVLADNELYSGTVADF 225
            ..||::||||.:|.|.|.....:|...||| ..::.:..||:||....||.:.|...||.|..:|
Zfish   122 DDGRMYVCGTKAFNPTCGYLSYADGKLTLEILQEDTKGKCPFDPFQRYTSAMVDGAYYSATSMNF 186

  Fly   226 SGSDPIIYR---EPLQTEQYDSLSLNAPNFV--SSFTQG--------DFVYFFFRETAVEFINCG 277
            .||:|::.|   |.::|| :.|..|:.|||:  :...:|        |.:|.||.|||||:.:|.
Zfish   187 RGSEPVMMRSTEESIRTE-FTSTWLSEPNFIHMAHIPEGQSNPDGDDDKIYLFFSETAVEYESCT 250

  Fly   278 KAIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLNCSIPG-DYPFYFNEIQSASNLVEGQYGSMSS 341
            |...||||||||.|.||....:.:||||||:||:|.:|. :.|..   :|...:|....:   ::
Zfish   251 KVDVSRVARVCKGDLGGQRTLQKKWTSFLKARLDCQVPNTNLPLL---VQDVFHLCPDDW---TT 309

  Fly   342 KLIYGVFNTPSNSIPGSAVCAFALQDIADTF-EGQFKEQTGINSN---WLPVNNAKVPDPRPGSC 402
            .:.|.||...|:|...||||::.::||...| :|:||....:.::   |: :.:.::||||||:|
Zfish   310 CVFYAVFTPQSDSSQYSAVCSYKIEDIKTVFSKGKFKAPFNVETSFVKWV-MYSGELPDPRPGAC 373

  Fly   403 HND---------SRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPG 458
            .::         |..|||.||.|:|...|||:.|.|  .||:||:...  .||:|.|...... .
Zfish   374 IDNHARQKGITKSLELPDKTLQFVKDKPLMDQAVTA--EQPLLVKRGA--AFTRIVVTTATAL-N 433

  Fly   459 GKTYDVIFVGTDHGKIIKSVNAESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKDG 523
            |.::.|:|:||..|.::|:||...       ..|::|||.:...||||:.|.:            
Zfish   434 GTSHQVMFIGTKSGSVLKAVNYNG-------EMVIMEEIQLFEPSEPIKILRL------------ 479

  Fly   524 SYDDGKLIIVTDSQVVAIQLHRCHNDKITSCSECVALQDPYCAWDKIAGKCRSHGAPRWLEENYF 588
            |....:|.:.::..||.:.:..|  .:..:|.:||..:||:|.||.....|.:..:......:..
Zfish   480 SSSKKQLYVGSEVGVVQLSISEC--GQYQTCLDCVLARDPHCGWDLDTEHCATINSIHRTRSSTV 542

  Fly   589 YQNVATGQHAACPSGKINSKDANA--------------------------GEQKGFRNDMDLLD- 626
            .|:::.|..:.||:..: ||..|.                          ||.....|.:.:|. 
Zfish   543 IQSLSDGDASQCPAIGV-SKPVNISFYHGNTVKLGCQPYSNLAQVEWQLNGEPIKPSNTIQILSD 606

  Fly   627 -----------------------SRRQSKDQEIIDNIDKNFEGPQISADIINAQYTVETLV-MAV 667
                                   |:|:.:.|.:..:: |.:.....:|.:.:.:....||| |.|
Zfish   607 GLMIFNASLDATGYYICSSIETVSQRKYQTQHVAYDV-KMWSESGTTASLHHVKEKERTLVAMVV 670

  Fly   668 LAGSIFSLLV--GFFTGYF---CGRRCHKD-----EDD 695
            :...:.:.|:  ..:.|:.   |..|..||     |||
Zfish   671 ILSLVLAALLIWNLYKGHLSLPCLHRRVKDTQNRHEDD 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 162/476 (34%)
PSI 545..>579 CDD:214655 10/33 (30%)
sema4eNP_001077334.1 Sema_4E 45..500 CDD:200521 162/474 (34%)
PSI 501..555 CDD:214655 12/55 (22%)
Ig 567..640 CDD:299845 7/72 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 724..750
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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