DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema1a and SEMA3B

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_001276990.1 Gene:SEMA3B / 7869 HGNCID:10724 Length:754 Species:Homo sapiens


Alignment Length:739 Identity:209/739 - (28%)
Similarity:324/739 - (43%) Gaps:122/739 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 LVTKDGNSLLIGARNTVFNLSIHDLVEQ-QRLVWTSPEDDTKMCLVKGKD-EEACQNYIRIMVVP 161
            ||.::...|.:||.|.|.:|::.::.:: ::|.|.:|.:..:.|...||| ...|.|:::::...
Human    59 LVDEERGRLFVGAENHVASLNLDNISKRAKKLAWPAPVEWREECNWAGKDIGTECMNFVKLLHAY 123

  Fly   162 SPGRLFVCGTNSFRPMCNTYIISDSNYTLE---------ATKNGQAVCPYDPRHNSTSVLADNEL 217
            :...|..|||.:|.|.|   ...:..:..|         ..::|:...||||||.:.|||...||
Human   124 NRTHLLACGTGAFHPTC---AFVEVGHRAEEPVLRLDPGRIEDGKGKSPYDPRHRAASVLVGEEL 185

  Fly   218 YSGTVADFSGSDPIIYRE-----PLQTEQYDSLSLNAPNFVSSF-------TQGDFVYFFFRETA 270
            |||..||..|.|..|:|.     .|:||.:||..||.|.||..|       ...|.:||||||||
Human   186 YSGVAADLMGRDFTIFRSLGQRPSLRTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRETA 250

  Fly   271 VEFINC-GKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLNCSIPG-DYPFYFNEIQ--SASNL 331
            ||.... |:...|||.::|:.|.||.....|:||:|||:||.||:|| :...:|::::  .|.::
Human   251 VEAAPALGRLSVSRVGQICRNDVGGQRSLVNKWTTFLKARLVCSVPGVEGDTHFDQLRPFPAEDV 315

  Fly   332 VEGQYGSMSSKLIYGVFNTPSNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPD 396
            .........:.|:|.||:|.|:...|||||.:::.|:...|.|.|..:.|....|:.. ..:||.
Human   316 FLLSSRDHRTPLLYAVFSTSSSIFQGSAVCVYSMNDVRRAFLGPFAHKEGPMHQWVSY-QGRVPY 379

  Fly   397 PRPGSC-------HNDSRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQI 454
            ||||.|       .:.::..||..:.|.:.|.||..:|.....:|:.::....|.|||||.|...
Human   380 PRPGMCPSKTFGTFSSTKDFPDDVIQFARNHPLMYNSVLPTGGRPLFLQVGANYTFTQIAADRVA 444

  Fly   455 KTPGGKTYDVIFVGTDHGKIIK--SVNAESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQY 517
            ...|  .|||:|:|||.|.::|  ||...|..||:   .:::||:.|...|..:.:::|      
Human   445 AADG--HYDVLFIGTDVGTVLKVISVPKGSRPSAE---GLLLEELHVFEDSAAVTSMQI------ 498

  Fly   518 DQPKDGSYDDGKLIIVTDSQVVAIQLHRC--HNDKITSCSECVALQDPYCAWDKIAGKCRSHGAP 580
                  |....:|.:.:.|.|..|.||||  |.   ..|:||...:|||||||.:|.......|.
Human   499 ------SSKRHQLYVASRSAVAQIALHRCAAHG---RVCTECCLARDPYCAWDGVACTRFQPSAK 554

  Fly   581 RWLEENYFYQNVATGQHAACPSGKINSKDANAGEQK--GFRNDMDLLDSRRQSKDQEIIDNIDKN 643
            |    .:..|:|..|..:...||. :|:.|.. |.|  |.......|:...:|    :...::..
Human   555 R----RFRRQDVRNGDPSTLCSGD-SSRPALL-EHKVFGVEGSSAFLECEPRS----LQARVEWT 609

  Fly   644 FEGPQISADIINAQYTVETLVMAVLAGSIFSLLVGFFTG-YFCGRRCHKDEDDNLPYPDTEYEYF 707
            |:...::|   :.|...|........|.:...|....:| |.|..              .|..:.
Human   610 FQRAGVTA---HTQVLAEERTERTARGLLLRRLRRRDSGVYLCAA--------------VEQGFT 657

  Fly   708 EQRQNVNSFPSSCRIQQEPKLLPQVEEVTYAEPVLLPQPPPPN---------------------K 751
            :..:.::....|.         .|.|.:..||......||.|.                     :
Human   658 QPLRRLSLHVLSA---------TQAERLARAEEAAPAAPPGPKLWYRDFLQLVEPGGGGSANSLR 713

  Fly   752 MHSPKNTLRKPPMHQMHQGPNSET 775
            |..|:..|:..|:....:|.|..|
Human   714 MCRPQPALQSLPLESRRKGRNRRT 737

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 156/482 (32%)
PSI 545..>579 CDD:214655 14/35 (40%)
SEMA3BNP_001276990.1 Sema 46..521 CDD:301699 156/482 (32%)
PSI 520..>556 CDD:214655 16/42 (38%)
Ig_Semaphorin_classIII 580..670 CDD:143279 15/111 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 707..754 7/31 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D153798at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.