DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and sema6ba

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_001353244.1 Gene:sema6ba / 562398 ZFINID:ZDB-GENE-131024-1 Length:872 Species:Danio rerio


Alignment Length:1004 Identity:273/1004 - (27%)
Similarity:415/1004 - (41%) Gaps:288/1004 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 MQVFLLLTVLVIGNQSAWQENIRPKLYVELGPEDVLK----FVG--------NESVVDHFKLVTK 102
            :|:|.:|.:..    .::.|...|.:   ..|.:|::    |:|        .|.:  :.:.|.:
Zfish     9 LQIFAVLQLAA----CSFPEEPEPLI---SAPAEVVRRYPVFLGRAHRSYTRQEPL--YIQTVLR 64

  Fly   103 DGNSLLIGARNTVFNLSI-----HDLVEQQRLVWTSPEDDTKMCLVKGKDEEACQNYIRIMVVPS 162
            ...:|.||||:.::.:.:     .::...::..|.|.::|.::|.:|||.||.|:|||::: :..
Zfish    65 VNRTLYIGARDDLYRVELDHVSGDEMFYSKKRTWESNKNDIRICRMKGKHEEECRNYIKVL-LSH 128

  Fly   163 PGRLFVCGTNSFRPMCNTYIISDSNYTLEATK------NGQAVCPYDPRHNSTSVLADNELYSGT 221
            .|.|||||||:|.|:|       :|||.:..:      :|.|.|||||:|.:.::.|:..|::||
Zfish   129 DGGLFVCGTNAFNPLC-------ANYTRDTLELVGEPISGMARCPYDPKHANVALFAEGSLFTGT 186

  Fly   222 VADFSGSDPIIYRE-----PLQTEQYDSLSLNAPNFVSSFTQGDFVYFFFRETAVEFINCGKAIY 281
            |.||...|.:|||.     .|:|.::||.....|.|||:...|..:||||||.|:||....|.:.
Zfish   187 VTDFLAIDAVIYRSLGESPALRTIKHDSKWFREPYFVSAVEWGPHIYFFFREMAMEFNYLEKVMV 251

  Fly   282 SRVARVCKWDKGGPHRFRNR-WTSFLKSRLNCSIPGDYPFYFNEIQSASNLVEGQYGSMSSKLIY 345
            ||||||||.|.||..|...| ||||||:|||||||||..||||.:||.|.::..|    ...:|.
Zfish   252 SRVARVCKGDLGGSQRVLERQWTSFLKARLNCSIPGDSHFYFNLLQSTSPIIRMQ----GRDVIL 312

  Fly   346 GVFNTPSNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSC------HN 404
            |||:||||||||||||||.:|.:|..|||:||||....|.|.||.:..||.||||.|      .:
Zfish   313 GVFSTPSNSIPGSAVCAFDMQQLARVFEGRFKEQKSPESIWTPVPDELVPRPRPGGCAVQGSRFS 377

  Fly   405 DSRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPGGKTYDVIFVGT 469
            .|..|||..|||||.|.||||.||....:|.:|:|...|:...:.||.:......:|  |:|:|:
Zfish   378 TSNTLPDEVLNFIKIHPLMDEAVPLLGHRPWIVKTMVRYQLNTMVVDTEAGPHRNRT--VVFLGS 440

  Fly   470 DHGKIIKSVNAESADSADKVTSVVIEEI----------DVLTKSEPIRNLEIVRTMQYDQPKDGS 524
            ..|.::|.:...|.::....|:..:||:          |.....:|:       ::..|:|..  
Zfish   441 TRGTVLKFLITPSPENQYSNTNTFLEELEGYNPERCGDDSAQAMQPL-------SLTLDKPSH-- 496

  Fly   525 YDDGKLIIVTDSQVVAIQLHRCHNDKITSC-SECVALQDPYCAWDKIAGKCRSHGAPRWLEENYF 588
                .|::...|.||.:.:.|||..  :.| ..|:|.:||||.|.: ...|........|.   |
Zfish   497 ----TLLLAFHSCVVRVPVARCHLH--SRCMKNCIASRDPYCGWTR-GSTCTLLRPGTRLP---F 551

  Fly   589 YQNVATGQHAACPSGKINSKDANAGEQKGFRNDMDLLDSRRQSKDQEIIDNIDKNFEGPQISADI 653
            .|:|..|            ..::.|:..|      ||......:.:.::                
Zfish   552 VQDVEYG------------NTSHLGDCDG------LLRESFMDEPESLV---------------- 582

  Fly   654 INAQYTVETLVM-AVLAGSIFSLLVGFFTGYFCGRRCHKDEDDNLPYPDTEYEYFEQR------- 710
                 |:..||: ||.|.|..:.|.|....:..|::.......|.|....:.:..::|       
Zfish   583 -----TLNLLVVAAVSAFSTGAALSGLAVCWIMGQKHRHRSHSNTPSSSIQRKSEKERCMMGQSR 642

  Fly   711 ----QNVNSFPSSCRIQQ------------------EPKLLPQVEEV------------------ 735
                .:|:....:.|.:.                  :|.|||..|:.                  
Zfish   643 SGSVMSVSRHSGTDRPRSQGETLFVMPNGWVKAGDLDPGLLPTPEQTPLQQKRGLRLSDSGSSWD 707

  Fly   736 ---TYAEPVLLPQPPPPNKMHSPKNTLRKPPMHQMHQGPNSETLFQFQPDGYNTQQSYRGRDNFG 797
               |:...|....||||:.::.....|:                                    |
Zfish   708 QSQTFLSSVGTQCPPPPSTLYLSSKLLQ------------------------------------G 736

  Fly   798 TLRSHQVMGDNYRRGDGFSTTRSVKKAVNNTNTRNR--SLGRARRQPPRHGIVTQHRS---NSPQ 857
            |.|.|:                   :|:.....|.|  ||.:.|.|..|.|.:.:..:   |.|.
Zfish   737 TGRRHE-------------------EAIETGIDRQRYVSLSKYRDQGIRPGTLLRKSAGEYNYPM 782

  Fly   858 QQQQQSQQPHSSSGSSPVMSNSSSSPAPPSSSPSPQESPKNCSYIYRDXLICNTKSMPLIQAQST 922
                                             :||:||.....:          |.|..|.:.:
Zfish   783 ---------------------------------TPQDSPDRRRVV----------SAPSTQIEYS 804

  Fly   923 HAQPHPQSH------PHPLPPPGPTTPPA 945
             .:|...:|      .|.:||.|....||
Zfish   805 -GEPLRWTHEGYIFSSHGIPPTGHHYTPA 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 186/487 (38%)
PSI 545..>579 CDD:214655 12/34 (35%)
sema6baNP_001353244.1 Sema_6B 49..512 CDD:200528 186/491 (38%)
PSI 513..>542 CDD:307546 12/31 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 318 1.000 Domainoid score I1228
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 349 1.000 Inparanoid score I2257
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000892
OrthoInspector 1 1.000 - - mtm6502
orthoMCL 1 0.900 - - OOG6_101616
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X415
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.960

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