DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and Sema5c

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster


Alignment Length:584 Identity:190/584 - (32%)
Similarity:289/584 - (49%) Gaps:90/584 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 KLSKFYGYGWMQVFLLLTVLVI-GNQSAWQENIRPKLYVELGPEDVLKFVGNESVVDHFK----- 98
            ||.|.:...|:  .|:|::|.: |.|.:.......|..|:|...| .:::..:.::...|     
  Fly     7 KLPKMFSQLWL--LLILSLLTLEGPQPSTGSGYTTKSSVDLLEND-SRYISYQDLMSTAKRFYDP 68

  Fly    99 --------LVTKDGNSLLIGARNTVFNLSIHDLVEQQRLVWTSPEDDTKMCLVKGKDEEACQNYI 155
                    |.....|.:::|||:|::.:|. ||...:|..|.:...:..||..||:.|..|:||:
  Fly    69 ETTWYSEMLFDVARNQVIVGARDTLYRMSF-DLEPLERASWGATPSEIAMCQAKGQSERWCRNYV 132

  Fly   156 RIMVVPSPGRLFVCGTNSFRPMCNTYIISDSNYTLEATKNGQAVCPYDPRHNSTSVLADN-ELYS 219
            |::......:|:.||||:|:|.|:...:  .|.|:....:|...||:.|:.||||:|..| :|:.
  Fly   133 RVLHSYGENQLYACGTNAFQPSCSWRQM--ENLTVTGVDSGVVKCPFHPQANSTSLLQSNGQLFV 195

  Fly   220 GTVADFSGSDPIIYREP-------LQTEQYDSLSLNAPNFVSSFTQGDFVYFFFRETAVEFINCG 277
            ||..||||||..|.|..       |:|:||::..|:...||.||..|.||||..||:|.|.::||
  Fly   196 GTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVGSFEAGHFVYFLLRESAAEHMSCG 260

  Fly   278 KAIYSRVARVCKWDKGGPHR-FRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNLVEGQYGSMSS 341
            |.||||||||||.|.||..: .|:.||||||:|||||:||:||:||:|||       |...:.|.
  Fly   261 KVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGEYPYYFDEIQ-------GMTYAESE 318

  Fly   342 KLIYGVFNTPSNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSCH--- 403
            .::|..|.|..:||.||||||:.|..|...|:|.||:|...::.|..||..:....:.|:..   
  Fly   319 SILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQRSQFQCGTSSIGH 383

  Fly   404 --NDSRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPGGKTYDVIF 466
              ..||            :.||||.|....::|:.  .|.:.:|.::|:|. |.|...:.: |:|
  Fly   384 WLESSR------------YQLMDEAVQPIGAEPLY--HSKLEQFGRLALDI-INTKTEQVH-VLF 432

  Fly   467 VGTDHGKIIKSVNAESADSADKVTSVVIE---EIDVLTKSEPIRNLEIVRTMQYDQPKDGSYDDG 528
            |.:. |..||.::.:.  ..|.|.:.::|   ..|..|.|        :..|.|.:..|..|   
  Fly   433 VASS-GNHIKKLSVKY--DGDGVQTCLVELWQADDTGTSS--------LLNMAYLKVSDSLY--- 483

  Fly   529 KLIIVTDSQVVAIQLHRCHNDKITSCSECVALQDPYCAWDKIAGKCRS-----------HGAPR 581
               :.||..:..|....|  .:..|.|.|:...||||.|:::..:|..           |.||:
  Fly   484 ---LGTDLALTRIPAQHC--SRHVSQSSCLNSMDPYCGWNELVERCMPQPQDSSVLQHWHQAPQ 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 164/484 (34%)
PSI 545..>579 CDD:214655 11/44 (25%)
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 163/473 (34%)
PSI 497..546 CDD:279745 13/48 (27%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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