DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and Sema1b

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster


Alignment Length:730 Identity:273/730 - (37%)
Similarity:382/730 - (52%) Gaps:118/730 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 MHLKSATAKATIMKHKLSKFYGYGWMQVFLLLTVLVIGNQSAWQENIRPKLYVELGPEDVL-KFV 88
            |..||..:.|.::.:.:         .:.||:|:..:...:.|..:::|.|..:  .:.|| .|:
  Fly     1 MSSKSRPSSAAMLVNAI---------PMILLITLSGLTIVAGWMPDVKPDLQTK--QDKVLAHFI 54

  Fly    89 GNESVVDHFKLVTKDGNSLLIGARNTVFNLSIHDLVEQQRLVWTSPEDDTKMCLVKGKDEEACQN 153
            ||.:  |:||::..:...:|:||::.::|:|::.|.|..||.|.|.:.|.::|.:|||.|..|.|
  Fly    55 GNST--DYFKILDHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALKGKHEWDCHN 117

  Fly   154 YIRIMVVPSPGRLFVCGTNSFRPMCNTY----IISDS----------NYTLEATKNGQAVCPYDP 204
            |:|:..:...|.:.:|||||::|.|..|    :.|:.          .|.:......|.:|||.|
  Fly   118 YLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSP 182

  Fly   205 RHNSTSVLADNELYSGTVADFSGSDPIIYREPLQTEQYDSLSLNAPNFVSSFTQGDFVYFFFRET 269
            .||||...||..|||.|||||||.||:||||.|:|||||...||.|:||.:..:..:|.|||||.
  Fly   183 AHNSTYAFADGHLYSATVADFSGGDPLIYRENLRTEQYDLKQLNQPDFVGAIERNGYVLFFFREL 247

  Fly   270 AVEFINCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNLVEG 334
            ::|.:|.|||:|||||||||.|:|||:.....||||||:|||||:||::||||:|||:.|.:|| 
  Fly   248 SMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYFDEIQAISPIVE- 311

  Fly   335 QYGSMSSKLIYGVFNTPSNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRP 399
               |.|..|||.||.|..|:|||||||||.:.||...|:|:||.|....|:||||...:||.|||
  Fly   312 ---SGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRP 373

  Fly   400 GSCHNDSRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPGGKTYDV 464
            |.|..|||.|....:||||.|.||:|.|||...:|:|.:.:..:|.|.|||..|:|:..|..|||
  Fly   374 GQCVEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYYDV 438

  Fly   465 IFVGTDHGKIIKSVNAESA---DSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKDGSYD 526
            |:.|||.||:.|.:|..|.   .:.|::.:|||.|:.||....|||.|.|            |..
  Fly   439 IYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVI------------STS 491

  Fly   527 DGKLIIVTDSQVVAIQLHRCHNDKITSCSECVALQDPYCAWDKIAGKCRSHGAPRWLEENYFYQN 591
            ...|::|:|..:|::.||.|.:  |..|..|::||||.||||....:|:               |
  Fly   492 KNSLVVVSDGSLVSVPLHHCSH--IVDCLGCLSLQDPICAWDLQTHECK---------------N 539

  Fly   592 VATGQH-----------------AA--CPSGKINSKDA---------------------NAGEQK 616
            :||.||                 ||  ||....::..|                     |.|..:
  Fly   540 LATSQHKFGTKTYLQSLNSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNVGSSQ 604

  Fly   617 GFR----------NDMDLLDSRRQSKDQEIIDNIDKNFEGPQIS-ADIINAQYTVETLVMAVLAG 670
            |.:          :|..|......|.|.   |:|..|...||.| |.:...:|......|.:...
  Fly   605 GNQPSLEQQPTGGDDFGLNKITLTSMDP---DDIMPNLNDPQKSTASVDEIKYASTPSFMLLTTI 666

  Fly   671 SIFSLLVGFFTGYFC 685
            ..|:.|||...|..|
  Fly   667 VFFTFLVGGIAGICC 681

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 213/471 (45%)
PSI 545..>579 CDD:214655 13/33 (39%)
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 215/473 (45%)
PSI 510..>537 CDD:214655 12/28 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 318 1.000 Domainoid score I1228
eggNOG 1 0.900 - - E1_KOG3611
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 349 1.000 Inparanoid score I2257
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28691
OrthoDB 1 1.010 - - D17608at50557
OrthoFinder 1 1.000 - - FOG0000892
OrthoInspector 1 1.000 - - mtm6502
orthoMCL 1 0.900 - - OOG6_101616
Panther 1 1.100 - - P PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X415
1110.880

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