DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and sema6a

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_956286.1 Gene:sema6a / 336060 ZFINID:ZDB-GENE-030131-8004 Length:968 Species:Danio rerio


Alignment Length:1014 Identity:289/1014 - (28%)
Similarity:434/1014 - (42%) Gaps:237/1014 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 QVFLLLTVLVIGNQSAWQENIRPKLYVELGPEDVLK----FVGNE----SVVDH---FKLVTKDG 104
            |..||...|:....:|:.|:..|   :.:...:..|    |||::    :...|   .:|:....
Zfish     4 QALLLYLTLLQTAGAAFPEDTEP---ISIAHGNYTKQYPVFVGHKPGRNNTQRHKLDIQLIVIMN 65

  Fly   105 NSLLIGARNTVFNL-----SIHDLVEQQRLVWTSPEDDTKMCLVKGKDEEACQNYIRIMVVPSPG 164
            .:|.:.||:.::.|     |..::...::|.|.|.:.|...|.:|||.::.|.|:|::::..|..
Zfish    66 RTLYVAARDHIYTLDMETSSTEEIFFSKKLTWKSRQADVDTCRMKGKHKDECHNFIKVLLQQSED 130

  Fly   165 RLFVCGTNSFRPMCNTYIISDSNYTLEATKNGQAVCPYDPRHNSTSVLADNELYSGTVADFSGSD 229
            .|||||||:|.|.|.||.: ||...|....:|.|.||||.:|.:.::.||.:|||.||.||...|
Zfish   131 SLFVCGTNAFNPSCRTYRM-DSLDALGEEISGMARCPYDAKHANVALFADGKLYSATVTDFLAID 194

  Fly   230 PIIYRE-----PLQTEQYDSLSLNAPNFVSSFTQGDFVYFFFRETAVEFINCGKAIYSRVARVCK 289
            .:|||.     .|:|.::||..|..|.||.:....||:||||||.|:|:.:.||.::.|||||||
Zfish   195 AVIYRSLGDSPTLRTVKHDSKWLKEPYFVQAVDYEDFIYFFFREIAMEYNSMGKVVFPRVARVCK 259

  Fly   290 WDKGGPHR-FRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNLVEGQYGSMSSK-LIYGVFNTPS 352
            .|.||..| ...:||||||:|||||||||..||||.:|:.::::.     :|.: ::...|:||.
Zfish   260 SDSGGSQRVLEKQWTSFLKTRLNCSIPGDSHFYFNILQAVTDVIH-----ISGRDVVMATFSTPY 319

  Fly   353 NSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSCHNDSRA--------L 409
            ||||||||||:.:.:||..|.|:||||...:|.|.||...:||.||||.|...|..        .
Zfish   320 NSIPGSAVCAYDMSEIALAFTGRFKEQKSPDSTWTPVPEERVPKPRPGVCAGSSSVEKFKVSSEF 384

  Fly   410 PDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPGGKTYDVIFVGTDHGKI 474
            ||.:|:|||.|.||:|.|||..::|..::|...||.|:||||.........|  |:|:|::.|.:
Zfish   385 PDDSLSFIKAHPLMEEAVPAIANRPWFLKTMVRYRLTRIAVDNAAGPHSNHT--VVFLGSERGIV 447

  Fly   475 IKSVNAESADSADKVTSVVIEEIDVLTKSE-PIRNLEIVR--TMQYDQPKDGSYDDGKLIIVTDS 536
            :|.:....:.:.:  .|:.:||::|....: .|..:|..|  :||.|.      ....|.:...|
Zfish   448 LKFLAKIRSGALN--DSLFLEELNVYNAEKCSIDGVEDKRIISMQIDS------RSRSLFVAFSS 504

  Fly   537 QVVAIQLHRCHNDKITSCSE-CVALQDPYCAWDKIAGKCRS-HGAPRWLEENYFYQNVATG---- 595
            .||.:.|.||  .:...|.: |:|.:||||.|.. .|.||. ....:|    .|.|:|..|    
Zfish   505 CVVRVPLARC--QRHGKCKKSCIASRDPYCGWVS-EGACREITSDAKW----PFEQDVEQGNTDG 562

  Fly   596 ----QHA-ACPSGKINSKDAN-------AGEQKGFRNDMDLLDSRRQSKDQEIIDNIDKNFEGPQ 648
                |:: ...:|:::|...:       .|..:..::..:.|.|......||....|.:.|...:
Zfish   563 LGDCQNSFVALNGRVSSPSVSPAVVSVPLGRGRVLKDHQEPLVSGSSETQQESAGVIRETFHRDR 627

  Fly   649 ISADIINAQYTVETLVMAVL----AGSIFSLLVGF------------------------------ 679
                  :....|..|.:||:    .|:|||.::.:                              
Zfish   628 ------DQMVPVTLLAIAVILAFSMGAIFSGILVYCVCDHHRRREFPMSGRKEKDCAASRRGSMN 686

  Fly   680 ----FTGYF----------------------CGRRCHKDED----DNLPYPDTE----------- 703
                .||.|                      .||...|.|.    ..||.|::.           
Zfish   687 SVTKLTGLFETQAKDGRAEQMLTPLMNGRLVNGRMLIKAEQHLDLSALPTPESTPLQPRRKPSRG 751

  Fly   704 YEYFEQRQN-VNS------------FPSSCRIQQEPKLLPQVEEVTYAEPVLLPQPP-------- 747
            ...:|:.|| :|:            .|:...::..|..:..|        |:||.||        
Zfish   752 SREWERNQNLINACTKELSSMGSPVIPTELPLRASPGHISSV--------VVLPLPPHQSYQHEY 808

  Fly   748 ---PPNKMHSPKNTLRKPPMHQMHQGPNSETLFQFQPDGYNT-------QQSYRGRDNFGTLRSH 802
               |..:...|..||....:....:|...|.:....|....:       |...|       |..|
Zfish   809 VEHPQQRPDDPAATLEFQTLRSPCRGAEEEVVPPRVPQREASLVPPAVPQMGKR-------LDMH 866

  Fly   803 QVMGDNYRRGDGFSTTRSVKKAVNNTN-------TRNRSLGRARRQPPRHGIVTQHRSNSPQQ-Q 859
            ..|   |.|  ||..:..:||. :|||       :||.|. |....||           :||: .
Zfish   867 SSM---YAR--GFPMSSGLKKQ-HNTNSSNSSHMSRNHSF-RVETPPP-----------APQRVD 913

  Fly   860 QQQSQQP------HSSSGSSPVMSNSSSSPAPPSSSPSP 892
            ..|...|      |.|..|...:|...:....|...|.|
Zfish   914 SMQVSSPGLGLSHHPSLSSFGSLSRCGARQMKPDVPPKP 952

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 182/484 (38%)
PSI 545..>579 CDD:214655 13/35 (37%)
sema6aNP_956286.1 Sema 48..512 CDD:301699 181/479 (38%)
PSI 513..>545 CDD:279745 13/34 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000892
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101616
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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