DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema1a and Sema3e

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_001100049.1 Gene:Sema3e / 296789 RGDID:1310973 Length:775 Species:Rattus norvegicus


Alignment Length:788 Identity:206/788 - (26%)
Similarity:344/788 - (43%) Gaps:142/788 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 WMQVFLLLTVLVIGNQSAWQENIRPKLYVELGPEDVLKFVGNESVVD-HFKLVTKDGNSLLIGAR 112
            |..:..|.|.....|.|..:..:..|..:||....:  |......:| |..|:.:....|.:|.|
  Rat    13 WGHLLELWTPGYTANPSYPRLRLSHKELLELNRTSI--FQSPFGFLDLHTMLLDEYQERLFVGGR 75

  Fly   113 NTVFNLSIHDLVEQQR-LVWTSPEDDTKMCLVKGKDEEACQNYIRIMVVPSPGRLFVCGTNSFRP 176
            :.|::|::..:.:..| :.|.|.....:.|::||||...|.||:|::...:...|..|.|.:|.|
  Rat    76 DLVYSLNLERVSDGYREIYWPSTAVKVEECIMKGKDANECANYVRVLHHYNRTHLLTCATGAFDP 140

  Fly   177 MCNTYII----SDSNYTLEA--TKNGQAVCPYDPRHNSTSVLADNELYSGTVADFSGSDPIIYRE 235
            .|....:    .|..:.||:  ::.|:..||:||..:..|.|..|||::|..:|:.|.|..|:|.
  Rat   141 HCAFIRVGHHSEDPLFHLESHRSERGRGRCPFDPNSSFVSTLVGNELFAGLYSDYWGRDSAIFRS 205

  Fly   236 -----PLQTEQYDSLSLNAPNFVSSF-------TQGDFVYFFFRETAVEFINCGKAIYSRVARVC 288
                 .::||..|...|..|.||.|:       .:.:.:||||.|.|:|..|....||:||.|:|
  Rat   206 LGKLGHIRTEHDDERLLKEPKFVGSYMIPDNEDPEDNKMYFFFTEKALEAENNAHTIYTRVGRLC 270

  Fly   289 KWDKGGPHRFRNRWTSFLKSRLNCSIPG--DYPFYFNEIQSASNLVEGQYGSMSSKLIYGVFNTP 351
            ..|.||.....|:|::|||:||.||:||  ....:|:|::....|   ......:.:|:|:|||.
  Rat   271 VNDMGGQRILVNKWSTFLKARLVCSVPGMNGIDTHFDELEDVFLL---PTRDPKNPVIFGLFNTT 332

  Fly   352 SNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSC--------HNDSRA 408
            ||...|.|||.:.:..|.:.|.|.:..:.|...:| .:...|||.||||||        :..::.
  Rat   333 SNIFRGHAVCVYHMSSIREAFNGPYAHKEGPEYHW-SLYEGKVPYPRPGSCASKVNGGKYGSTKD 396

  Fly   409 LPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPGGKTYDVIFVGTDHGK 473
            .||..:.|.:.|.||.:.:.....:||||:|...|...|:||| :::...|: |||:|:|||.|.
  Rat   397 YPDDAIRFARMHPLMYQPIKPVHKKPILVKTDGKYNLRQLAVD-RVEAEDGQ-YDVLFIGTDTGI 459

  Fly   474 IIKSVNAESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKDGSYDDGKLIIVTDSQV 538
            ::|.:...:.:: :.:..|::||:.:.....||.::||....|            :|.|.:.|.|
  Rat   460 VLKVITIYNQET-EWMEEVILEELQIFKDPAPIISMEISSKRQ------------QLYIGSASAV 511

  Fly   539 VAIQLHRCHNDKI-TSCSECVALQDPYCAWDKIAGKCRSHGAPRWLEENYFYQNVATGQHAACPS 602
            ..::.|.|  |.. ::|::|...:|||||||.|:  |          ..|:    .||.|:....
  Rat   512 AQVRFHHC--DMYGSACADCCLARDPYCAWDGIS--C----------SRYY----PTGAHSKRRF 558

  Fly   603 GKINSKDANAGEQ-------------------KGFRNDMDLLDSRRQSKDQEIIDNIDKNFEGPQ 648
            .:.:.:..||.:|                   .|..::..||:...:|...:::..:.|      
  Rat   559 RRQDVRHGNAAQQCFGQQFVGDALDRTEERLAYGIESNSTLLECTPRSLQAKVVWFVQK------ 617

  Fly   649 ISADIINAQYTVETLVMAVLAGSIFSLLVGFFTG-YFCG----------RRC------------- 689
             ..|:...:...:..|:.:..|.:|..:.....| |||.          |:.             
  Rat   618 -GRDVRKEEVKTDDRVVKMDLGLLFLRVRKSDAGTYFCQTVEHSFVHTVRKITLEVVEEHKVEGM 681

  Fly   690 -HKDEDD----NLPYPDTE---------YEYFEQRQNVNSFPSS--------CRIQQEPKLLPQV 732
             |||.::    .:|.|...         |:.|.|....::|...        |..::..||....
  Rat   682 FHKDREEEKHHKMPCPPLTGMSQGTKPWYKEFLQLIGYSNFQRVEEYCEKVWCTDKKRKKLKMSP 746

  Fly   733 EEVTYAEP 740
            .:..||.|
  Rat   747 SKWKYANP 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 148/484 (31%)
PSI 545..>579 CDD:214655 13/34 (38%)
Sema3eNP_001100049.1 Sema_3E 49..519 CDD:200514 149/488 (31%)
PSI 518..566 CDD:214655 17/65 (26%)
Ig_Semaphorin_classIII 585..675 CDD:143279 14/96 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.910

Return to query results.
Submit another query.