Sequence 1: | NP_001260265.1 | Gene: | Sema1a / 34192 | FlyBaseID: | FBgn0011259 | Length: | 1131 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001163933.1 | Gene: | Sema4b / 293042 | RGDID: | 1307872 | Length: | 821 | Species: | Rattus norvegicus |
Alignment Length: | 880 | Identity: | 252/880 - (28%) |
---|---|---|---|
Similarity: | 367/880 - (41%) | Gaps: | 234/880 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 50 MQVFLLL----TVLVIGNQSAWQENIRPKLYVELGPED--VLKF----VGNESVVDHFKLVTKDG 104
Fly 105 NSLLIGARNTVF----NLSIHDLVEQQRLVWTSPEDDTKMCLVKGKD-EEACQNYIRIMVVPSPG 164
Fly 165 RLFVCGTNSFRPMCNTYIISDSNYTL---EA----TKNGQAVCPYDPRHNSTSVLADNELYSGTV 222
Fly 223 ADFSGSDPIIYR--EPLQTEQYDSLS-LNAPNFVSS----------FTQGDFVYFFFRETAVEFI 274
Fly 275 NCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNLVEGQYGSM 339
Fly 340 SSKLIYGVFNTP--SNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSC 402
Fly 403 ---------HNDSRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPG 458
Fly 459 -GKTYDVIFVGTDHGKIIKSVNAESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKD 522
Fly 523 GSYDDGKLIIVTDSQVVAIQLHRCHNDKITSCSECVALQDPYCAWDKIAGKCRSHGAP-----RW 582
Fly 583 LEE----------NY------------------------------FYQNVAT----------GQH 597
Fly 598 AAC---PSGKINSKDANAG--------EQKGFR----------NDMDLLDSRRQSKDQEIIDNID 641
Fly 642 KNFEGPQISADI-------INAQYTVETLVMAVLAGSIFSLLVGFFTGYFCGRRCHKDEDDNLPY 699
Fly 700 PDTEYEYFEQRQNVNSF--PSSCRIQQEPKLLPQVEEVTYAEPVLLPQPPPPNKMHSPKNTLRKP 762
Fly 763 PMHQMHQ-------GPNSETLFQFQPDGYNTQQSY 790 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Sema1a | NP_001260265.1 | Sema_1A | 91..546 | CDD:200498 | 173/491 (35%) |
PSI | 545..>579 | CDD:214655 | 11/33 (33%) | ||
Sema4b | NP_001163933.1 | Sema | 46..509 | CDD:417757 | 176/498 (35%) |
PSI | 510..556 | CDD:396154 | 13/47 (28%) | ||
Ig_Sema4B_like | 577..661 | CDD:409456 | 12/83 (14%) | ||
Ig strand B | 590..594 | CDD:409456 | 0/3 (0%) | ||
Ig strand C | 602..606 | CDD:409456 | 1/3 (33%) | ||
Ig strand E | 624..627 | CDD:409456 | 1/2 (50%) | ||
Ig strand F | 637..642 | CDD:409456 | 0/4 (0%) | ||
Ig strand G | 654..657 | CDD:409456 | 0/2 (0%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR11036 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.010 |