DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and Sema4b

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_001163933.1 Gene:Sema4b / 293042 RGDID:1307872 Length:821 Species:Rattus norvegicus


Alignment Length:880 Identity:252/880 - (28%)
Similarity:367/880 - (41%) Gaps:234/880 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 MQVFLLL----TVLVIGNQSAWQENIRPKLYVELGPED--VLKF----VGNESVVDHFKLVTKDG 104
            :|:.|||    |...:|          |::.|.|..|:  :.||    :.|.:.:    |:::||
  Rat    14 LQLLLLLLRTTTARALG----------PRISVPLDSEERLIRKFEAENISNYTAL----LLSQDG 64

  Fly   105 NSLLIGARNTVF----NLSIHDLVEQQRLVWTSPEDDTKMCLVKGKD-EEACQNYIRIMVVPSPG 164
            .:|.:|||..:|    |||.....|.|.|:|::..|..:.|..|||| :..|||||:|::..:..
  Rat    65 KTLYVGAREALFALNSNLSFLPGGEYQELLWSADPDRKQQCSFKGKDPKRDCQNYIKILLPLNSS 129

  Fly   165 RLFVCGTNSFRPMCNTYIISDSNYTL---EA----TKNGQAVCPYDPRHNSTSVLADNELYSGTV 222
            .|..|||.:|.|:| .| |:.:::||   ||    .::|:..||:||...||:::.|.|||:|||
  Rat   130 HLLTCGTAAFSPLC-AY-INTASFTLARDEAGSVLLEDGKGRCPFDPNFKSTALVVDGELYTGTV 192

  Fly   223 ADFSGSDPIIYR--EPLQTEQYDSLS-LNAPNFVSS----------FTQGDFVYFFFRETAVEFI 274
            :.|.|:||.|.|  .|..|:...||: |..|.||:|          ....|.:||||.||..||.
  Rat   193 SSFQGNDPAISRSQSPRPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFE 257

  Fly   275 NCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNLVEGQYGSM 339
            .....|.||||||||.|:||....:.|||||||::|.||.|.| .|.||.:|....|..... ..
  Rat   258 FFENTIVSRVARVCKGDEGGERVLQQRWTSFLKAQLLCSRPDD-GFPFNVLQDVFTLNPNPQ-DW 320

  Fly   340 SSKLIYGVFNTP--SNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSC 402
            ...|.||||.:.  ..:..|||:|.|.:.|:...|:|.:|:.......|. .....||.||||:|
  Rat   321 RKTLFYGVFTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWY-TETHPVPTPRPGAC 384

  Fly   403 ---------HNDSRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPG 458
                     .|.|..|||..|||:|.|.|||..|.   |:.:|::...  |:.::||.   :.||
  Rat   385 ITNSARERKINSSLQLPDRVLNFLKDHFLMDGQVR---SRLLLLQPQA--RYQRVAVH---RVPG 441

  Fly   459 -GKTYDVIFVGTDHGKIIKSVNAESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKD 522
             ..||||:|:||..|::.|:|..:|...       :|||:.|..:.:|::||.:           
  Rat   442 LHSTYDVLFLGTGDGRLHKAVTLDSRVH-------IIEELQVFPQGQPVQNLLL----------- 488

  Fly   523 GSYDDGKLIIVTDSQVVAIQLHRCHNDKITSCSECVALQDPYCAWDKIAGKCRSHGAP-----RW 582
             ....|.|...:.|.||.:.:..|  ....:|.:|:..:||||||:....|..|...|     .|
  Rat   489 -DSHGGLLYASSHSGVVQVPVANC--SLYPTCGDCLLARDPYCAWNGSTCKLLSLYQPDLASRPW 550

  Fly   583 LEE----------NY------------------------------FYQNVAT----------GQH 597
            :::          |.                              ...|:||          ...
  Rat   551 IQDIEGANTKELCNISSAKARSFKPGKPCKQVQIQANTVNTLACPLLSNLATRLWLHNGAPVNAS 615

  Fly   598 AAC---PSGKINSKDANAG--------EQKGFR----------NDMDLLDSRRQSKDQEIIDNID 641
            |:|   |||.:....:..|        .::|||          .:..::|...||....:|.|..
  Rat   616 ASCRVLPSGDLLLVGSQQGLGVFQCWSIEEGFRQLVASYCPEVKEDGVMDQNDQSDGTPVIINTS 680

  Fly   642 KNFEGPQISADI-------INAQYTVETLVMAVLAGSIFSLLVGFFTGYFCGRRCHKDEDDNLPY 699
            :      :||..       .:..|..|.|||..|.|....|||.||                   
  Rat   681 R------VSAPAGGRASWGADKSYWNEFLVMCTLFGLAVVLLVLFF------------------- 720

  Fly   700 PDTEYEYFEQRQNVNSF--PSSCRIQQEPKLLPQVEEVTYAEPVLLPQPPPPNKMHSPKNTLRKP 762
                  .:..|..:..|  ...| ....||..|         .||.|:..|.|.:..|..    |
  Rat   721 ------LYRNRDGMKLFLKQGEC-ASVHPKTRP---------AVLPPETRPLNGVGPPST----P 765

  Fly   763 PMHQMHQ-------GPNSETLFQFQPDGYNTQQSY 790
            ..|:.:|       ||...|..:.:|  .:.|.|:
  Rat   766 LDHRGYQALSDSSPGPRVFTESEKRP--LSIQDSF 798

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 173/491 (35%)
PSI 545..>579 CDD:214655 11/33 (33%)
Sema4bNP_001163933.1 Sema 46..509 CDD:417757 176/498 (35%)
PSI 510..556 CDD:396154 13/47 (28%)
Ig_Sema4B_like 577..661 CDD:409456 12/83 (14%)
Ig strand B 590..594 CDD:409456 0/3 (0%)
Ig strand C 602..606 CDD:409456 1/3 (33%)
Ig strand E 624..627 CDD:409456 1/2 (50%)
Ig strand F 637..642 CDD:409456 0/4 (0%)
Ig strand G 654..657 CDD:409456 0/2 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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