DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and Sema3g

DIOPT Version :10

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_001094352.1 Gene:Sema3g / 290562 RGDID:1306079 Length:780 Species:Rattus norvegicus


Alignment Length:616 Identity:180/616 - (29%)
Similarity:275/616 - (44%) Gaps:92/616 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 LVIGNQSAWQENIRPKLYVELGPEDVLKFVGNESVVDHFKLVTKDGNSLLIGARNTVFNLSIHDL 123
            |:..|:||          :.|||...|..  ....:|.::      :.|.:|.|:.:::|.:...
  Rat    41 LLTTNRSA----------IFLGPRGSLDL--QVMYLDEYR------DRLFLGGRDALYSLRLDQA 87

  Fly   124 VEQQRLVWTSPEDDTKM-CLVKGKDE-EACQNYIRIMVVPSPGRLFVCGTNSFRPMCNTYIISD- 185
            ....|.|...|:...|: |:.||||. ..|.|::|::...:...|..|||.:|:|:|....:.. 
  Rat    88 WPDPREVLWPPQPGQKVECVRKGKDPLTECANFVRVLQPHNRTHLLACGTGAFQPICTFITVGHR 152

  Fly   186 SNYTL----EATKNGQAVCPYDPRHNSTSVLADNELYSGTVADFSGSDPIIYR----EPLQTEQY 242
            ..:.|    .:.:||:..||::|.....|.....|||:|..|||.|.:.:|:|    .|......
  Rat   153 GEHVLHLDPSSIENGRGRCPHEPSRPFASTFVGGELYTGLTADFLGREAMIFRSGGPRPALRSDS 217

  Fly   243 DSLSLNAPNFV-------SSFTQGDFVYFFFRETAVE-FINCGKAIYSRVARVCKWDKGGPHRFR 299
            |...|:.|.||       :|....|.|||||.||... ....|....|||.|||..|.||.....
  Rat   218 DQSLLHDPRFVMAARIPDNSDRDDDKVYFFFSETVPSPDGGPGHVTVSRVGRVCVNDAGGQRVLV 282

  Fly   300 NRWTSFLKSRLNCSI--PGDYPFYFNEIQ--------SASNLVEGQYGSMSSKLIYGVFNTPSNS 354
            |:|::|||:||.||:  ||....:|::::        :..||.           :|.:|:|.|..
  Rat   283 NKWSTFLKARLVCSVPGPGGAETHFDQLEDVFLLWPKAGKNLE-----------VYALFSTVSAV 336

  Fly   355 IPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSC-----------HNDSRA 408
            ..|.|||.:.:.||.:.|.|.|..:.|....|.|. ..|||.||||.|           ...::.
  Rat   337 FRGFAVCVYHMVDIWEVFNGPFAHRDGPQHQWGPY-GGKVPFPRPGVCPSKMTAQPGRPFGSTKD 400

  Fly   409 LPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPGGKTYDVIFVGTDHGK 473
            .||..|.|::.|.||.:.|.....:|:||:|....:..||.|| :::...| ||||||:|||.|.
  Rat   401 YPDEVLQFVRGHPLMFQPVRPRRGRPVLVKTHLAQQLCQIVVD-RVEAEDG-TYDVIFLGTDSGS 463

  Fly   474 IIKSVNAESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKDGSYDDGKLIIVTDSQV 538
            ::|.: |.......:...||:||:.|.....||..:||            |.....|.:.:...|
  Rat   464 VLKII-ALQGSGLPEPEEVVLEELQVFKVPTPITEMEI------------SVKRQTLYVGSPLGV 515

  Fly   539 VAIQLHRCHNDKITSCSECVALQDPYCAWDKIAGKCRSHGAPRWLEENYFYQNVATGQHAACPSG 603
            ..:|||:|.... ::|:||...:|||||||   |...:...|...:..:..|::..|..|....|
  Rat   516 ARLQLHQCETYG-SACAECCLARDPYCAWD---GTSCARYRPSSGKRRFRRQDIRHGNPAVQCLG 576

  Fly   604 KINSKDANAG---EQKGFRNDMDLLDSRRQS 631
            :..|:|..:|   ...|..::...|:.|.:|
  Rat   577 QGQSQDKASGLVTRVFGTEHNSTFLECRPKS 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 148/494 (30%)
PSI 545..601 CDD:396154 16/55 (29%)
Sema3gNP_001094352.1 Sema 50..523 CDD:472829 152/507 (30%)
PSI 522..568 CDD:214655 14/49 (29%)
Ig_Sema3 591..676 CDD:409455 4/17 (24%)
Ig strand B 596..604 CDD:409455 1/7 (14%)
Ig strand C 610..616 CDD:409455
Ig strand C' 618..621 CDD:409455
Ig strand D 631..635 CDD:409455
Ig strand E 638..645 CDD:409455
Ig strand F 651..660 CDD:409455
Ig strand G 663..676 CDD:409455
Blue background indicates that the domain is not in the aligned region.

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