DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and Sema4f

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_035480.3 Gene:Sema4f / 20355 MGIID:1340055 Length:777 Species:Mus musculus


Alignment Length:742 Identity:205/742 - (27%)
Similarity:321/742 - (43%) Gaps:148/742 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 LVTKDGNSLLIGARNTVFNLSIHDLVEQ-QRLVWTSPEDDTKMCLVKGKDEEACQNYIRIMVVPS 162
            ||....::|.:|||:::|.|::....|: :|:.|..||...:.|..|||.|:.|.|:|:|:.:.:
Mouse    75 LVDPASHTLYVGARDSIFALTLPFSGEKPRRIDWMVPETHRQNCRKKGKKEDECHNFIQILAIAN 139

  Fly   163 PGRLFVCGTNSFRPMCNTYIISDSNYTLEATKNGQAVCPYDPRHNSTSVLADNELYSGTVADFSG 227
            ...|..|||.:|.|.|....:| |...:|..::|:..||::|...|.:|:|...||:.||.:|.|
Mouse   140 ASHLLTCGTFAFDPKCGVIDVS-SFQQVERLESGRGKCPFEPAQRSAAVMAGGVLYTATVKNFLG 203

  Fly   228 SDPIIYREPLQTEQY---DSLS--LNAPNFVSSFTQG----------DFVYFFFRETAVEFINCG 277
            ::|||.|...:.|.:   ::||  ||||.||::....          |.::|||.||:....:..
Mouse   204 TEPIISRAVGRAEDWIRTETLSSWLNAPAFVAAMVLSPAEWGDEDGDDEIFFFFTETSRVLDSYE 268

  Fly   278 KAIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNLVEG------QY 336
            :....||||||..|.||....:.|||:|||:.|.|  ||.      |...||.:::.      |.
Mouse   269 RIKVPRVARVCAGDLGGRKTLQQRWTTFLKADLLC--PGP------EHGRASGVLQDMTELRPQP 325

  Fly   337 GSMSSKLIYGVFNTPSNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGS 401
            |: .:.|.||:|::.......||||||..|||.....|.|:|.....:..|||.:.:||.||||.
Mouse   326 GA-GTPLFYGIFSSQWEGAAISAVCAFRPQDIRAVLNGPFRELKHDCNRGLPVMDNEVPQPRPGE 389

  Fly   402 C---------HNDSRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDA-QIKT 456
            |         ...|.:|||..|.||:.|.|||..|.....:|:||.|.|.|    :.|.| ::.:
Mouse   390 CITNNMKFQQFGSSLSLPDRVLTFIRDHPLMDRPVFPADGRPLLVTTDTAY----LRVVAHRVTS 450

  Fly   457 PGGKTYDVIFVGTDHGKIIKSVNAESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPK 521
            ..||.|||:::||:.|.:.::|...:..|       |:|::.:..:::|:.::::          
Mouse   451 LSGKEYDVLYLGTEDGHLHRAVRIGAQLS-------VLEDLALFPETQPVESMKL---------- 498

  Fly   522 DGSYDDGKLIIVTDSQVVAIQLHRCHNDKITSCSECVALQDPYCAWDKIAGKCRSH-GAPRWLEE 585
               |.|. |::.:.::|..:....|  .::.|||||:..|||.|||......|.:| |..|.:.:
Mouse   499 ---YHDW-LLVGSHTEVTQVNTSNC--GRLQSCSECILAQDPVCAWSFRLDACVAHAGEHRGMVQ 557

  Fly   586 N-------------------YFYQNVATGQHAACPSGKINSKDANAGEQKGFRNDMDLLDSRRQS 631
            :                   .|...|||..|...|....::..:....|.   :.:..|..||..
Mouse   558 DIESADVSSLCPKEPGEHPVVFEVPVATVGHVVLPCSPSSAWASCVWHQP---SGVTSLTPRRDG 619

  Fly   632 KDQEIIDNIDKNF--EGPQISADIINAQYTV------------ETLVMAVLAGSIFSLLVGFFTG 682
            .:..:.......:  |..:..|..:.|.|::            .|:|.|.|.|....:|....|.
Mouse   620 LEVVVTPGAMGAYACECQEGGAARVVAAYSLVWGSQRGPANRAHTVVGAGLVGFFLGVLAASLTL 684

  Fly   683 YFCGRRCHKDEDDNL-------------PYPDTEYEYFEQRQNVNSFPSSCRIQQEPKLLPQVEE 734
            ...|||..:.....|             |...|.|.                 |..|...|:.|.
Mouse   685 LLIGRRQQRRRQRELLARDKVGLDLGAPPSGTTSYS-----------------QDPPSPSPEDER 732

  Fly   735 VTYA------------EPVLLPQPPPP 749
            :..|            .|.||...|.|
Mouse   733 LPLALGKRGSGFGGFPPPFLLDSCPSP 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 151/478 (32%)
PSI 545..>579 CDD:214655 14/34 (41%)
Sema4fNP_035480.3 Sema_4F 58..517 CDD:200522 151/476 (32%)
PSI 518..569 CDD:279745 16/52 (31%)
Ig 576..655 CDD:299845 14/81 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 703..742 8/55 (15%)
PDZ-binding. /evidence=ECO:0000269|PubMed:11483650 775..777
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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