DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema1a and Sema3f

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:XP_017168715.1 Gene:Sema3f / 20350 MGIID:1096347 Length:820 Species:Mus musculus


Alignment Length:889 Identity:225/889 - (25%)
Similarity:372/889 - (41%) Gaps:253/889 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 FLLLTVLVIGNQSAW-----QENIRPKLYVELGPEDVLKFVGNESVVDHF------------KLV 100
            |:|...|:.|   ||     |:.:.....|.|..:: ||..|..    ||            .|.
Mouse     6 FILWASLLTG---AWPATPIQDQLPATPRVRLSFKE-LKATGTA----HFFNFLLNTTDYRILLK 62

  Fly   101 TKDGNSLLIGARNTVFNLSIHDLVEQQRLV-WTSPEDDTKMCLVKGKDEEA-CQNYIRIMVVPSP 163
            .:|.:.:.:|:::.|.:|.:||:..:..:: |.:.....:.|::.|||... |.|::|::...:.
Mouse    63 DEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECILSGKDGNGECGNFVRLIQPWNR 127

  Fly   164 GRLFVCGTNSFRPMCNTYI------------------------------------ISDSNYTLEA 192
            ..|:||||.::.||| ||:                                    ..|..:.||.
Mouse   128 THLYVCGTGAYNPMC-TYVNRGRRAQALPWTQMQVVRGRGSRATDGADRPTPTAPRQDYIFYLEP 191

  Fly   193 TK--NGQAVCPYDPRHNSTSVLADNELYSGTVADFSGSDPIIYR-----EPLQTEQYDSLSLNAP 250
            .|  :|:..|||||:.::.|.|.:.|||:|...||.|:|..|:|     ..::|:||:|..||.|
Mouse   192 EKLESGKGKCPYDPKLDTASALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDP 256

  Fly   251 NFV-------SSFTQGDFVYFFFRETAVEFINCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKS 308
            :|:       |:....|.:||||||.:.|... ..|:|:|:.|:|..|.||.....|:|::|||:
Mouse   257 SFIHAELIPDSAERNDDKLYFFFRERSAEAPQ-NPAVYARIGRICLNDDGGHCCLVNKWSTFLKA 320

  Fly   309 RLNCSIPGD--YPFYFNEIQSASNLVEGQYGSMSSKLIYGVFNTPSNSIPGSAVCAFALQDIADT 371
            ||.||:||:  ...:|:|:|   ::...|...:.:.:||.||.:..:...|||||.:::.||...
Mouse   321 RLVCSVPGEDGIETHFDELQ---DVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMV 382

  Fly   372 FEGQFKEQTGINSNWLPVNNAKVPDPRPGSC--------HNDSRALPDPTLNFIKTHSLMDENVP 428
            |.|.|..:.|.|..|:|. :.|:|.||||:|        ...::..||..:||::||.||.:.|.
Mouse   383 FNGPFAHKEGPNYQWMPF-SGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRTHPLMYQAVY 446

  Fly   429 AFFSQPILVRTSTIYRFTQIAVDAQIKTPGGKTYDVIFVGTDHGKIIKSVNAESADSADKVTSVV 493
            ....:|::|||...||.|.:||| |:....|: |:|:|:|||.|.:.|.:.....|  .:|..::
Mouse   447 PLQRRPLVVRTGAPYRLTTVAVD-QVDAADGR-YEVLFLGTDRGTVQKVIVLPKDD--QEVEELM 507

  Fly   494 IEEIDVLTKSEPIRNLEIVRTMQYDQPKDGSYDDGKLIIVTDSQVVAIQLHRCHNDKITSCSECV 558
            :||::|..:..|::.:.|....|            :|.:.:...|..:.||||.... .:|::|.
Mouse   508 LEEVEVFKEPAPVKTMTISSKRQ------------QLYVASAVGVTHLSLHRCQAYG-AACADCC 559

  Fly   559 ALQDPYCAWD-------KIAGKCRS------HGAP------------------------------ 580
            ..:|||||||       ..:.|.||      ||.|                              
Mouse   560 LARDPYCAWDGQACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFL 624

  Fly   581 -----------RWLEE--------------------------------NYFYQNVATGQHAACPS 602
                       :||.:                                .:||...:..:  .|.|
Mouse   625 ECQPRSPQATVKWLFQRDPSDRRREVSSCVLSPPPTPTPRGYAAPWIWEFFYSGESLRE--KCTS 687

  Fly   603 ----GKINSKDANAGEQKGFRNDMDLLDSRRQSKDQEIIDNIDKNFEGPQISADI-INAQYTVET 662
                |:.::.:|.||....|:..:....|.|.:.              |.:..:. .|.::.:.|
Mouse   688 VASLGQPSTGEAKAGGSLEFKASLVYRASSRSTP--------------PGLPRETQKNKKFRICT 738

  Fly   663 LV-MAVLAGSI--FSLLVGFFTGYFCGRRCHKDEDDNLPYPDTEYEYFEQRQNVNSFPSSCRIQQ 724
            |. :.:|..:|  .|..:..|.|||.|:          |.|.:           :|..::.|:.|
Mouse   739 LSGLYLLVWNITWVSSSIWKFCGYFLGK----------PSPCS-----------SSRGNAMRVSQ 782

  Fly   725 EPKLLPQ---VEEVTYAEPVLLPQPPPPNKMHSPKNTLRKPPMH 765
            ...|:..   |....::..|..|:||||..         :||.|
Mouse   783 LGILIKWKFCVRSKIFSFIVQKPRPPPPQP---------QPPGH 817

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 155/528 (29%)
PSI 545..>579 CDD:214655 15/46 (33%)
Sema3fXP_017168715.1 Sema_3F 48..548 CDD:200515 153/521 (29%)
PSI 547..584 CDD:214655 12/37 (32%)
Ig 609..>650 CDD:386229 2/40 (5%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.