DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and smp-2

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_491197.3 Gene:smp-2 / 183905 WormBaseID:WBGene00004890 Length:649 Species:Caenorhabditis elegans


Alignment Length:645 Identity:156/645 - (24%)
Similarity:265/645 - (41%) Gaps:148/645 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 LKFVGNESVVDHFKLVTKDGNSLLIGARNTVFNLSIHDLVEQQRLVWTSPEDDTKMCLVKGKDEE 149
            |.:..||.:|...||   .|..:|:|.||.|:|:||..::|..|..|||.::....|....:...
 Worm    38 LSYGANEKLVILHKL---PGEYVLLGGRNHVYNISISSMLEIARYEWTSSDEARTNCAAISQTPA 99

  Fly   150 ACQNYIRIMVVPSPGRLFVCGTNSFRPMCNTYIISDSNYTLEATKNGQAVCPYDPRHNSTSVLAD 214
            :|:|:||.....:...|.:|||::.:|.|..:  ...|...:...:...:.|.|....:..:.::
 Worm   100 SCENFIRTYFELTNDTLILCGTHALQPTCAEF--RKGNAKPQRLISAVGMSPIDADSTAPFIRSN 162

  Fly   215 NELYSGTVADFSGSDPIIYREPLQTEQYDSLS----LNAPNFVSSFTQGDF---------VYFFF 266
            ..:.:..||:.|.|:|::.|..: .:.:..:.    |..|..:|||.|.:|         |.|||
 Worm   163 ENIITVNVAELSSSEPLLVRRNV-IKMWKGIENDVILRTPRGLSSFEQANFLSMHKVKKEVLFFF 226

  Fly   267 RETAVEFINCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLNCSI--PGDYPFYFNEIQSAS 329
            .|:.:|...||....:||.|||:.|.||...:...|:|:.|:|:.|||  .....||||:....:
 Worm   227 SESPMETEGCGLHKVARVGRVCEDDPGGRLSYNKEWSSYEKARIECSIEETDTDTFYFNQFAGVA 291

  Fly   330 NLVEGQYGSMSSKLIYGVFNTPSNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKV 394
            .         |....||.|.:....|..||:|.::.:.|:.:|...:||.|              
 Worm   292 E---------SPTSFYGAFRSQLAGIGASAICKYSKKVISGSFASGYKEST-------------- 333

  Fly   395 PDPRPGSCHNDSRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIY------RFTQIAVDAQ 453
                |.:|   |||.....|:.|:...|:.:.:.|          :.||      ||..:.....
 Worm   334 ----PDTC---SRANDIEELSRIRLKPLIKQKISA----------NPIYIFHGKDRFVHVLAQED 381

  Fly   454 IKTPGGKTYDVIFVGTDHGKIIKSVNAESADSADKV-----------TSVVIEEIDVLTKSEPIR 507
            .:....:.||:::|.|:.|.|:|.|    ..|.||.           |:..|.::.:.:|:    
 Worm   382 TRDLSNRAYDILYVATNLGNILKIV----VPSTDKTGRHAVTLKVLPTNSKIVDMSLYSKN---- 438

  Fly   508 NLEIVRTMQYDQPKDGSYDDGKLIIVTDSQVVAIQLHRCHNDKITSCSECVALQDPYCAW----D 568
            |||                  :||::|:..|:.:....||  ..::|:||:|..||:|||    |
 Worm   439 NLE------------------ELIVITEQSVLKVPTATCH--LASNCAECLAHGDPHCAWADGVD 483

  Fly   569 KIAGKCRSHGAPRWLEENYFYQNVATGQHAACPSGKINSKDANAGEQKGFRNDMDLLDSRRQSKD 633
            .|                    ::.|.|.      |..|:|:...:...|.|...::.:..::|:
 Worm   484 CI--------------------DIRTDQR------KSASQDSGTCDVVSFENHKPVMIAPLKNKE 522

  Fly   634 QEII-------DNIDKNFEGPQISADII---NAQYTVETLVMA--VLAGSIFSLLVGFFT 681
            ...|       :...|......|..:|:   .:::....||.|  ||.||||.....:|:
 Worm   523 SAKIPVCLCETEKQKKPCATEVIQKEIVLTGGSEFWKYILVFAVGVLTGSIFHYCYFYFS 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 119/486 (24%)
PSI 545..>579 CDD:214655 13/37 (35%)
smp-2NP_491197.3 Sema 47..429 CDD:214747 109/431 (25%)
Sema <390..478 CDD:387663 30/115 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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