DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and C36B7.5

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_001359920.1 Gene:C36B7.5 / 180975 WormBaseID:WBGene00016468 Length:1148 Species:Caenorhabditis elegans


Alignment Length:565 Identity:99/565 - (17%)
Similarity:168/565 - (29%) Gaps:233/565 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 NCGKAIYSRVARVC----------------------------KWDK-----GGPHRFRNR----- 301
            :|||:| .|.:|:|                            :|:|     |..|.:|||     
 Worm   412 SCGKSI-ERRSRICQNGLLCPGPATEERTCDKRPCPHWSNWGQWEKCSKECGAGHTYRNRECIDG 475

  Fly   302 -----------------------WTSFLKSRLNCSIPGDYPFYFNEIQ----SASNLVEGQYGSM 339
                                   ||::......|   |:........:    ..:|..:|.....
 Worm   476 VSCEGASEEKILCNQQPCPEWSQWTAWTVCDERC---GEESIRLRNRKCMNAENNNACDGPAQDQ 537

  Fly   340 SSKLIYGVFNTPSNSIPG----------SAVCAFALQ------DIADTFEGQFKEQTGIN----- 383
            .|        .|....|.          |..|....|      |..:...|..:|.....     
 Worm   538 MS--------CPYRDCPKWEEWGEWADCSTTCGQGTQKRLRKCDSGNECSGPGEEMRFCQIASCP 594

  Fly   384 --SNWLPVNNAKVPDPRPGSCHNDSRALPD-----PTLNFIKTHSLMDENVPAFFSQPILVRTST 441
              .:|.|.:...|...: |.|....:.:.|     |||..::....::::..   .:.::.|..|
 Worm   595 YWGDWTPWSGCSVSCGQ-GVCERTRKCITDEFLQLPTLEELERDDSLEKHEA---KEALIARAKT 655

  Fly   442 I--YR---------FTQIAVDAQIKTPGGKTYD-------VIFVG--------TDHGKIIKSVNA 480
            |  ||         |..::.:.|:    |.|.|       |...|        |:....|...| 
 Worm   656 ISKYRRTNETRLSPFRPLSPEPQL----GGTCDGPEMETKVCDAGPCCVWNRWTEWSPCIGCGN- 715

  Fly   481 ESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKDGSYDDGKL--------IIVTDSQ 537
            |.....::|.|     ::..:.:.|..:.:       |.|: |:|....|        |:...|.
 Worm   716 EGISKRNRVCS-----MEGQSPAPPPISFQ-------DNPR-GTYVTASLGQGPIGPNILPGMSP 767

  Fly   538 VVAIQLHR--------------CH--NDKITS--CSECVALQDP-----YCAWDKIAG--KCR-- 575
            :|.:::||              ||  .|...:  |.|..|.|||     :..|.:..|  :||  
 Worm   768 IVPVEIHRGKRQVLFGIQATPKCHCPGDTFQTRPCLEQNACQDPVGKCEWSEWGEWCGCMRCRPG 832

  Fly   576 -------------SHGAPRWLEENYFYQNVATGQHAACP-----------SGKINSKDA--NAGE 614
                         ..|.|...:......|....|..:||           :|:.|:..:  :|.|
 Worm   833 KEVRRRFCDRSPIGRGGPMRPDSTCDCGNGDDSQERSCPMEQTCYGNGIGTGRFNNAASMQDARE 897

  Fly   615 QKGFR-------------NDMDLLDSRR-----QSKDQEI-IDNI 640
            ::.||             .|....:|.|     :|:|:.: ||::
 Worm   898 RQNFRGRTGSFYNTAAPQRDRTSYNSNRRPSHSRSQDEYVPIDSV 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 67/411 (16%)
PSI 545..>579 CDD:214655 14/73 (19%)
C36B7.5NP_001359920.1 TSP1 309..348 CDD:214559
TSP1 351..398 CDD:214559
TSP1 400..446 CDD:214559 7/34 (21%)
TSP1 448..494 CDD:214559 7/45 (16%)
TSP1 496..546 CDD:214559 8/60 (13%)
TSP1 548..594 CDD:214559 6/45 (13%)
TSP1 596..>621 CDD:214559 5/25 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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