DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema1a and SEMA6C

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_001171532.1 Gene:SEMA6C / 10500 HGNCID:10740 Length:962 Species:Homo sapiens


Alignment Length:1117 Identity:314/1117 - (28%)
Similarity:448/1117 - (40%) Gaps:286/1117 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 WMQVFLLLTVLVIGN-QSAWQENIRPKLYVEL----------GPEDVLKFVGNESVVDHFKLVTK 102
            :|.:.|||.:|.:.: |:|:.::..|.|..:|          |.||  ..|..|..:|..:.:|.
Human     7 FMPLLLLLLLLSLPHTQAAFPQDPLPLLISDLQGTSPLSWFRGLED--DAVAAELGLDFQRFLTL 69

  Fly   103 DGNSLLIGARNTVFNLSI------HDLVEQQRLVWTSPEDDTKMCLVKGKDEEACQNYIRIMVVP 161
            : .:||:.||:.||:..:      ..||..:.|.|.|  .|.:.|.|:||..:.|.||||::|..
Human    70 N-RTLLVAARDHVFSFDLQAEEEGEGLVPNKYLTWRS--QDVENCAVRGKLTDECYNYIRVLVPW 131

  Fly   162 SPGRLFVCGTNSFRPMCNTYIISDSNYTLEATKNGQAVCPYDPRHNSTSVLADNELYSGTVADFS 226
            ....|..||||||.|:|.:|.|:......|.. :|||.||:|...::.::.|:..|||.|.|||.
Human   132 DSQTLLACGTNSFSPVCRSYGITSLQQEGEEL-SGQARCPFDATQSNVAIFAEGSLYSATAADFQ 195

  Fly   227 GSDPIIYRE-----PLQTEQYDSLSLNAPNFVSSFTQGDFVYFFFRETAVEFINCGKAIYSRVAR 286
            .||.::||.     ||::.:|||..|..|:||.:...||.|||||||.:||....|:..:|||||
Human   196 ASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVQALEHGDHVYFFFREVSVEDARLGRVQFSRVAR 260

  Fly   287 VCKWDKGG-PHRFRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNLVEGQYGSMSSKLIYGVFNT 350
            |||.|.|| |......||||||.|||||:|||..|||:.:|:    :.|.........::|||.|
Human   261 VCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQA----LTGPVNLHGRSALFGVFTT 321

  Fly   351 PSNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSC--------HNDSR 407
            .:|||||||||||.|.:|...|||:||||..::..|.||:..:||.||||||        .:.||
Human   322 QTNSIPGSAVCAFYLDEIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGGAALFSSSR 386

  Fly   408 ALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPGGKTYDVIFVGTDHG 472
            .|||..|.|||.|.|:|..||....||:|..||... .||:|||.........|  |:|:|::.|
Human   387 DLPDDVLTFIKAHPLLDPAVPPVTHQPLLTLTSRAL-LTQVAVDGMAGPHSNIT--VMFLGSNDG 448

  Fly   473 KIIKSVNAESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKDG---SYDDGKLIIVT 534
            .::|.:.........:  .:::||||..:   |.| ....||.|..:...|   ..:..:|.:..
Human   449 TVLKVLTPGGRSGGPE--PILLEEIDAYS---PAR-CSGKRTAQTARRIIGLELDTEGHRLFVAF 507

  Fly   535 DSQVVAIQLHRC--HNDKITSCS-ECVALQDPYCAWDKIAGKC---RSHGAPRWLEENYFYQNVA 593
            ...:|.:.|.||  |.    :|. .|:|.|||||.|....| |   |..|.....:..    |..
Human   508 SGCIVYLPLSRCARHG----ACQRSCLASQDPYCGWHSSRG-CVDIRGSGGTDVDQAG----NQE 563

  Fly   594 TGQHAACPSGKINSK------------------------DANAGEQ--------KGFRNDMDLLD 626
            :.:|..|..|...|:                        ||:...|        :|.|.|:....
Human   564 SMEHGDCQDGATGSQSGPGDSAYVLPGPGPSPGTPSPPSDAHPRPQSSTLGVHTRGVRRDLPPAS 628

  Fly   627 SRRQSKDQEIIDNIDKNFEGPQISADIINAQYTVETLVMAVLAGSIFSLLVGFFTGYFCG-RRCH 690
            :.|......::.::...|                      .|..|:..|||.      |. ||.|
Human   629 ASRSVPIPLLLASVAAAF----------------------ALGASVSGLLVS------CACRRAH 665

  Fly   691 ----KD-EDDNLPYPDTEYEYFEQRQNVNSFPSSCRIQQEPKLLPQVEEVTYAEPVLLPQPPPPN 750
                || |...||.|             .|..|..|:....                 |:||||:
Human   666 RRRGKDIETPGLPRP-------------LSLRSLARLHGGG-----------------PEPPPPS 700

  Fly   751 K----MHSPK--NTLRKPPMHQMHQG---PNSETLFQFQPDGYNTQQSYRGRDNFGTLRSHQVMG 806
            |    :.:|:  .|...||     :|   |....|    |...:|.:.        .::..:..|
Human   701 KDGDAVQTPQLYTTFLPPP-----EGVPPPELACL----PTPESTPEL--------PVKHLRAAG 748

  Fly   807 DNYRRGDGFSTTRSVKKAVNNTNTRNRSLGRARRQPPRHGIVTQHRSNSPQQQQQQSQQPHSSSG 871
            |.:...             .|.|......||:|         ..|.:..|..:......|....|
Human   749 DPWEWN-------------QNRNNAKEGPGRSR---------GGHAAGGPAPRVLVRPPPPGCPG 791

  Fly   872 SSPVMSNSSS------SPAPP---SSSPSPQESPKNCSYIYRDXLICNTKSMPLIQAQSTHAQPH 927
            .:..::....      .|.||   :..|:|..|                :::|...|.:....|.
Human   792 QAVEVTTLEELLRYLHGPQPPRKGAEPPAPLTS----------------RALPPEPAPALLGGPS 840

  Fly   928 PQSH--PHPL----PPPGP-TTPPAQP--RARSPMIGRTYAKSMPVTPVQ-PQSPLAETPSYELY 982
            |:.|  ..||    ||.|. .:.||:|  .|.:|.:|....:.:|.:..: |.:.|...||.. .
Human   841 PRPHECASPLRLDVPPEGRCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGG-P 904

  Fly   983 ERHSDAATFHFGDEDDDDDDEHDHEDTSSLAMITPPPPY----------DTPHLIASPPLPPPR- 1036
            .|:|.....|                   |..:..|..|          :.|.|...|||..|. 
Human   905 SRYSGGPGKH-------------------LLYLGRPEGYRGRALKRVDVEKPQLSLKPPLVGPSS 950

  Fly  1037 --------RFRF 1040
                    ||.|
Human   951 RQAVPNGGRFNF 962

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 185/477 (39%)
PSI 545..>579 CDD:214655 15/39 (38%)
SEMA6CNP_001171532.1 Sema 53..517 CDD:301699 185/480 (39%)
PSI 518..570 CDD:279745 18/60 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 318 1.000 Domainoid score I1252
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2116
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8465
orthoMCL 1 0.900 - - OOG6_101616
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X415
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
98.820

Return to query results.
Submit another query.