DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and LOC100537452

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:XP_003201673.4 Gene:LOC100537452 / 100537452 -ID:- Length:588 Species:Danio rerio


Alignment Length:558 Identity:128/558 - (22%)
Similarity:204/558 - (36%) Gaps:145/558 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 MQVFLLLTVLVIGNQSAWQENIRPKLYVELGPEDVLKFVGNESVVDHFKLVTKDGNSL--LIGAR 112
            |.|...:.:|::....|....|.....|.:..|.:.:|....|           .||.  |:.|.
Zfish     1 MNVNSCMFLLLMWTSYACASKIHHNARVTVKKEGISRFAFENS-----------NNSFIKLLSAS 54

  Fly   113 NTVFNLSIHDLVEQQRLVWTSPEDD-------TKMCLVKGKDEEACQNYIRIMVVPSPGR-LFVC 169
            |..:      :|..:||.:.....|       ..:|    :::..|...:.::...:.|. ||:|
Zfish    55 NITW------VVINERLYYIDTTQDFRPKPVNVNLC----RNDLTCAARVSVLTEGANGNLLFLC 109

  Fly   170 G-TNSFRPMCNTYIISDSNYTLEATKNGQAVC----PYDPRHNSTSVLADNELYSGTVADFSGSD 229
            | |:..:.||     ...|.|...|.     |    .|.|..|..|:|..:.||      |:.|:
Zfish   110 GTTDEEKTMC-----CSLNSTFSLTN-----CFDFEHYKPDINEPSLLVGDMLY------FTLSE 158

  Fly   230 PIIYR-----------EPLQTEQ-YDSLSLNAPNFVSSFTQGDFVYFFFRETAVEFINCGKAIYS 282
            ..:||           ...|||| |..|      ........|.:|.||.|......:.......
Zfish   159 KGLYRINKNKERNIWPPSTQTEQKYLKL------IAGEGQHKDKMYSFFAEKHKNKEDESDQWIP 217

  Fly   283 RVARVCKWDKGGPH-RFRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNLVE-GQYGSMSSKLIY 345
            ||::.|..|||||. :.::.|||.:.:||.|   |...|        :.|:: ....:.....||
Zfish   218 RVSQNCMNDKGGPKGQLQSSWTSMIYARLEC---GKRDF--------TQLIDVATIKTTHDTKIY 271

  Fly   346 GVFNTPSNSIPGSAVCAFALQDIADTF-EGQFKEQTGINSNWLPVNNAKVPDPRPGSCHNDSRAL 409
            .:|....|.   ||||.:.:.:|:..| ..||      |:|.:||::      |||:|..||..|
Zfish   272 ALFRNYWNM---SAVCVYNMTEISTIFNSSQF------NANNVPVSH------RPGTCVVDSTQL 321

  Fly   410 PDPTLNFIK-----THSLMDENVPAFFSQPILVRTSTIYRFTQIAVD-AQIKTPGGKTYDVIFVG 468
            ....|.|:|     ..::..||.|..|..         :.::.|.|| .|..|       |:.:.
Zfish   322 NGEVLTFMKERPEMKQTVKPENGPLIFRH---------HHYSHIQVDRVQDST-------VLLLS 370

  Fly   469 TDHGKIIKSVNAESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKDGSYDDGKLIIV 533
            .:.|.:.|.:...           |.|.:.|:.:..|..:...:.:|....      .:..|...
Zfish   371 LESGGVHKVLERP-----------VQEPVFVIAEYLPFPHGSSIASMILHT------SENLLYAS 418

  Fly   534 TDSQVVAIQLHRC---HNDKITSCSECVALQDPYCAWD 568
            :.::::.|.|..|   .|:    |.||...:||||.||
Zfish   419 SGNELIQIDLATCGVYGNE----CVECRLSRDPYCKWD 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 109/490 (22%)
PSI 545..>579 CDD:214655 11/27 (41%)
LOC100537452XP_003201673.4 Sema 60..429 CDD:326631 102/453 (23%)
Ig_3 487..546 CDD:316449
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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