DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and krt80

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_001163982.1 Gene:krt80 / 100316911 XenbaseID:XB-GENE-6044406 Length:409 Species:Xenopus tropicalis


Alignment Length:353 Identity:67/353 - (18%)
Similarity:126/353 - (35%) Gaps:92/353 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   325 IQSASNLVEGQYGSM-----SSKL-IYGVFNTPSNSIPGSAVCAFALQDIADTFEGQFKEQTGIN 383
            |.||:|   |.:.::     .||| |....::..:|.........||....|......|::..:.
 Frog    39 ISSATN---GNHSTLLEETFESKLKITSDIHSSLHSEEAETKLRAALATFNDKIRYLEKQREILE 100

  Fly   384 SNWLPVNNAKV--PDPRPGSCHNDSRAL---PDPTLNFIKTH----SLMD--ENVPAFFSQPILV 437
            |.|..:...:.  .|..|......||.|   .:.|.|..:|.    .:||  .::...|...:..
 Frog   101 SRWSMIQTEETTQTDLEPQYLSYISRLLGEVKNVTQNNHQTQRQLLDMMDSVNDMKDKFEDELFR 165

  Fly   438 RTSTIYRFTQIAVDAQIKTPGGKTYDVIFVGTDHGKIIKSVNAESADSADKVTSVVIEEIDVLTK 502
            ||...|.|.::..||.     |::                                :|:.::.|:
 Frog   166 RTDVEYSFVELKKDAD-----GRS--------------------------------LEQTELETR 193

  Fly   503 SEPIRN-LEIVRTMQYDQPKDGSYDDGKL-IIVTDSQVVAIQLHRCHNDKITSCSECVALQDPYC 565
            .:.|:. :::::|:...:.|:...|.|.: ::|...|...:.|     ||:.  .|..|..:...
 Frog   194 KQDIKEMIDLMKTVYKQELKELMEDSGDISVLVNMEQSCPLNL-----DKVV--EEVKAQYERIA 251

  Fly   566 AWDKIAGKCRSHGAPRWLEENYFYQNV-ATGQHAACPSGKINSKDANAGEQKGFRNDMDLLDSRR 629
            :|        |....:.|.:|...:.| ..|::..              |.|..|:::..|:|:.
 Frog   252 SW--------SRDEAQALSKNKLAEGVQRVGRYEL--------------ELKSSRSEITHLNSKI 294

  Fly   630 QSKDQEIIDNIDKNFEGPQISADIINAQ 657
            |....| |.:|.|  :..::..|:..||
 Frog   295 QRLRSE-IQSIQK--QCSKLEQDVSLAQ 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 44/239 (18%)
PSI 545..>579 CDD:214655 6/33 (18%)
krt80NP_001163982.1 Filament 82..381 CDD:365827 56/307 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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