DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1a and sema3bl

DIOPT Version :9

Sequence 1:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster
Sequence 2:NP_001116184.1 Gene:sema3bl / 100004611 ZFINID:ZDB-GENE-030131-2956 Length:771 Species:Danio rerio


Alignment Length:866 Identity:229/866 - (26%)
Similarity:370/866 - (42%) Gaps:181/866 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 LLLTVLVIGNQSAWQENIRPKLYVELGPEDVLKFVGNESVVD------HFKLVTKD--GNSLLIG 110
            |:|..||:...|..:.|: |:|  .|..:|:|. ....||.:      |...|..|  .:.|.:|
Zfish     6 LVLVALVLPLSSCTKVNV-PRL--RLTHKDLLD-TNRTSVFNGLHGDLHLSAVFLDEYHDRLFLG 66

  Fly   111 ARNTVFNLSIHDLVEQQRLVWTSPEDDTKMCLVKGKDEE-ACQNYIRIMVVPSPGRLFVCGTNSF 174
            .::.:::|.:....:.:.:.|.|...:.:.|::||||.| .|.|::|::...:...|..|||.:|
Zfish    67 GKDVLYSLRLDHTHDAKEIHWPSLPGNREDCILKGKDPEMECANFVRLLQPFNRTHLLACGTGAF 131

  Fly   175 RPMC---NTYIISDSNYTLEAT--KNGQAVCPYDPRHNSTSVLADNELYSGTVADFSGSDPII-- 232
            :|:|   |.....:..::|:.|  :||:..||:||:....|.....|||:|..|||.|.|.:|  
Zfish   132 QPVCAYVNVGHRGEHVFSLDQTTVQNGRGRCPHDPKLPFASTFTGGELYTGLTADFLGRDSVISR 196

  Fly   233 ---YREPLQTEQYDSLSLNAPNFV-------SSFTQGDFVYFFFRETAVEFI--NCGKAIYSRVA 285
               .|.|::||. |...|:.|.||       |:....|.:||||.|.|.|..  :...||::|:.
Zfish   197 GFGTRSPMRTET-DQRILHEPRFVAAHLIPDSADRDDDKIYFFFTERATETAERDDDGAIHTRIG 260

  Fly   286 RVCKWDKGGPHRFRNRWTSFLKSRLNCSIPGDYPF--YFNEIQSASNLVEGQYGSMSSKLIYGVF 348
            |:|..|.||.....|:|::|:|:||.||:||.:..  :|::::....|   :....::..||.:|
Zfish   261 RLCANDVGGQRVLVNKWSTFIKARLVCSVPGPHGIQTHFHQLEDVFLL---RTKDETNPEIYAIF 322

  Fly   349 NTPSNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSCHNDSRA----- 408
            :|.||...|.|||.:::.||.:.|.|.|..:.|.:..|.|. ..:||.||||.|.:...|     
Zfish   323 STISNVFQGYAVCVYSMADIREAFNGPFAHKEGPDYQWGPY-EGRVPYPRPGVCPSKITAQPGRA 386

  Fly   409 ------LPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPGGKTYDVIFV 467
                  .||..|.|.:||.||...|.....||:|:||...||.|.|.||......|  .|||:|:
Zfish   387 FRSTLEFPDTVLQFARTHPLMWRPVYPSHRQPLLLRTGAPYRLTHITVDRTQAEDG--YYDVMFI 449

  Fly   468 GTDHGKIIKSVNAESADS--ADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQPKDGSYDDGKL 530
            |||.|.::|.:.....:|  .:::|   :||:.|.....||.:::|            |.....|
Zfish   450 GTDIGTVLKVIVLGKGNSLAGEEIT---LEEMQVFKVPTPITSMDI------------SVKRQTL 499

  Fly   531 IIVTDSQVVAIQLHRCHNDKITSCSECVALQDPYCAWDKIAGKCRSHGAPRWLEENYFYQNVATG 595
            .:.:.:.||.:.|||| :....:|:||...:|||||||   |:..:...|. .:..|..|::   
Zfish   500 FVGSQTAVVQVPLHRC-SMYGKACAECCLARDPYCAWD---GQTCTRYLPN-TKRRYRRQDI--- 556

  Fly   596 QHA----ACPSGKINSKDANAGEQK---GFRNDMDLLDSRRQSKDQEIIDNIDKNFEGPQISADI 653
            :||    .|....::.:|.:..|::   |..|:...|:...:|....:..:|.:         |.
Zfish   557 KHANPAVQCMDQNLSVEDVDLSEERVVYGTENNSTFLECVPRSPQATVTWHIQR---------DD 612

  Fly   654 INAQYTVETLVMAVLAGSIFSLLVGFFTG-YFCGRRCH---------------KDEDDNLPYPDT 702
            ...:...:..::....|.:|..::....| |.|..|.|               .|...:|...|:
Zfish   613 YLGEVVFDERIIKTDDGLLFRRVLRQDEGIYVCRSREHGFTQTLSRFWLDVLNADTLSDLLSRDS 677

  Fly   703 EYEYFE----QRQNVNSFPSSCRIQQ-----EPKLLPQVEEVTYAEPVLLPQPPPPNKMHSPKNT 758
            :|:.:.    ....:|..|:....:.     .|..|||||:  |.|.|..            ...
Zfish   678 KYKVWSPCPANSATMNRGPARAWFKDVLQLIGPSNLPQVEQ--YCERVWC------------NEK 728

  Fly   759 LRKPPMHQMHQGPNSETLFQFQPDGYNTQQSYRGRDNFGTLRSHQVMGDNYRRGDGFSTTRSVKK 823
            ||                                       |.|:.|.|.||:....:....|:|
Zfish   729 LR---------------------------------------RKHKSMMDKYRQAQDSARRARVQK 754

  Fly   824 AVNNTNTRNRSLGRARRQPPR 844
                      |.|.:|.:.||
Zfish   755 ----------STGESRHRSPR 765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 154/497 (31%)
PSI 545..>579 CDD:214655 13/33 (39%)
sema3blNP_001116184.1 Sema_3G 42..515 CDD:200516 152/494 (31%)
PSI 514..>550 CDD:214655 14/40 (35%)
Ig_Semaphorin_classIII 579..664 CDD:143279 14/93 (15%)
IG_like 581..663 CDD:214653 13/90 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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