DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgp and MS2

DIOPT Version :9

Sequence 1:NP_001260257.1 Gene:Sgp / 34188 FlyBaseID:FBgn0032055 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_187805.1 Gene:MS2 / 820372 AraportID:AT3G11980 Length:616 Species:Arabidopsis thaliana


Alignment Length:520 Identity:139/520 - (26%)
Similarity:228/520 - (43%) Gaps:95/520 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ILQFYKDKSVFVTGGTGFLGKVIIEKLLR-STDVRRVYLLVRPKKNETVEGRFQAWKDEPVFKIL 68
            |:.|.:.|...:||.||||.||:|||:|| :.||.::|||::.|..|....|.   |:|.:...|
plant   124 IISFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERL---KNEVLDAEL 185

  Fly    69 LKAKPEA---------LKLVTPISGDCSEPGLGLSDGDRRMVTADVQVIIHSAASIRFVEPLQRA 124
            .....|.         |..:.|::|:..:..:||.......:..:|.|||:|||:..|.|....|
plant   186 FNTLKETHGASYMSFMLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINSAANTTFNERYDVA 250

  Fly   125 LNINTRATRLMIQLAKEMKGLEAFVHISTAFSNCPSQ-HIEERFYPEHLTCPAAKVLEFNE---- 184
            |:||||....::..||:.|.|:.|:.:|||:.|...| .|.|:.:...........||.|.    
plant   251 LDINTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFSMGDCIATENFLEGNRKALD 315

  Fly   185 ---------------TLSPDLLDKMAPALMGK-----FPNTYTYTKALAEQVIQMEGQDLPICVF 229
                           |.:.|...||....:.:     :.:||.:|||:.|.:|.....|:|:.:.
plant   316 VDREMKLALEAARKGTQNQDEAQKMKDLGLERARSYGWQDTYVFTKAMGEMMINSTRGDVPVVII 380

  Fly   230 RPAIILANFKEPMSGWID--NLHGVVALIYGNTYGILRLLYVNPKADAIIVPGDYCANVALASGW 292
            ||::|.:.:|:|..||::  .:...:.|.||.  |.|....|:||....:||.|...|..||:  
plant   381 RPSVIESTYKDPFPGWMEGNRMMDPIVLCYGK--GQLTGFLVDPKGVLDVVPADMVVNATLAA-- 441

  Fly   293 QVAKNSESRSSSQLAAKKPPP---IYTLATTKSNSITFGKAVKLGIHHNHTIPVTKTIWYPFAHF 354
             :||:.       :|...|.|   :|.:|::..|.:.|....:|..:|..|.|...:...|    
plant   442 -IAKHG-------MAMSDPEPEINVYQIASSAINPLVFEDLAELLYNHYKTSPCMDSKGDP---- 494

  Fly   355 TTCPWLFKLGCIFYHLIPGF-----FFDLLLR-------------------IQGKKPILMRSYQK 395
                       |...|:..|     |.|.|.|                   :|..|.|..:|.::
plant   495 -----------IMVRLMKLFNSVDDFSDHLWRDAQERSGLMSGMSSVDSKMMQKLKFICKKSVEQ 548

  Fly   396 IHEVLLLLFPFNGKTYEMDMNNTNQLWDSMSPEDRSIFPFDMATLNWEEYFTRI-LSGMRVFLYK 459
            ...:..:..|:.......|.:||.:|.::||.:::..|.||:.::||.:|.|.: :.|:|..:.|
plant   549 AKHLATIYEPYTFYGGRFDNSNTQRLMENMSEDEKREFGFDVGSINWTDYITNVHIPGLRRHVLK 613

  Fly   460  459
            plant   614  613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgpNP_001260257.1 PLN02996 1..449 CDD:215538 136/507 (27%)
FAR-N_SDR_e 12..333 CDD:187547 104/360 (29%)
FAR_C 367..457 CDD:176924 26/114 (23%)
MS2NP_187805.1 PLN02503 1..616 CDD:215279 139/520 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.970

Return to query results.
Submit another query.