DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bace and pgc

DIOPT Version :10

Sequence 1:NP_609235.1 Gene:Bace / 34182 FlyBaseID:FBgn0032049 Length:372 Species:Drosophila melanogaster
Sequence 2:NP_001015682.1 Gene:pgc / 548353 XenbaseID:XB-GENE-5838607 Length:385 Species:Xenopus tropicalis


Alignment Length:381 Identity:158/381 - (41%)
Similarity:226/381 - (59%) Gaps:33/381 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SAELHRVPILKEQNFVKTRQNVLAE---KSYLRTKYQLPSLRSVDEEQLSN--------SMNMAY 69
            |..|.|||:   :.|..||:.:...   ..:|:|..:.|:::.....| ||        .:::.|
 Frog    14 SEGLVRVPL---KRFKSTRETMKENGVLNDFLKTHKREPAIKYNWNSQ-SNFGVAYEPMYLDIYY 74

  Fly    70 YGAISIGTPAQSFKVLFDSGSSNLWVPSNTCKSDACLTHNQYDSSASSTYVANGESFSIQYGTGS 134
            :|.||||||.|:|.|.||:|||||||.|..|:|.||..|..::.|.||||.:|.:.||:.||:||
 Frog    75 FGEISIGTPPQNFLVAFDTGSSNLWVASTYCQSQACTNHPLFNPSLSSTYTSNNQQFSMWYGSGS 139

  Fly   135 LTGYLSTDTVDVNGLSIQSQTFAESTNEPGTNFNDANFDGILGMAYESLAVDGVAPPFYNMVSQG 199
            :||.|..|||.|.|||||:|....|..||.:.|..:.||||.||||:||:..|.:.....::.|.
 Frog   140 MTGVLGYDTVTVQGLSIQNQELGLSVTEPSSFFYYSKFDGIFGMAYQSLSAGGASTAVQGLIQQN 204

  Fly   200 LVDNSVFSFYLARDGTSTMGGELIFGGSDASLYSGALTYVPISEQGYWQFTMAGSSIDGYSL--C 262
            |:...||||||     ::..||:||||.|.||:||.:.:.|::::.|||..:...|::|.:.  |
 Frog   205 LIPQPVFSFYL-----TSQSGEVIFGGVDNSLFSGQIYWTPVTQEIYWQIAIDEFSVNGQATGWC 264

  Fly   263 DD-CQAIADTGTSLIVAPYNAYITLSEILNVGE--DG--YLDCSSVSSLPDVTFNIGGTNFVLKP 322
            .. ||.|.||||.|:..|.....||.:.:...|  :|  .::|:||.:||.::|.|.|..|.:.|
 Frog   265 SQGCQGIVDTGTPLLTIPQQYLSTLVQYVGAQEAQNGQFLVNCNSVQNLPPISFTISGIQFSIPP 329

  Fly   323 SAYIIQSDGNCMSAFE--YM----GTDFWILGDVFIGQYYTEFDLGNNRIGFAPVA 372
            ||||:|.:|.|:..||  |:    |...|||||||:.|||:.:|.|||::|||.:|
 Frog   330 SAYILQMNGYCVVGFESTYLPSRNGQPLWILGDVFLRQYYSVYDFGNNQVGFASMA 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BaceNP_609235.1 pepsin_retropepsin_like 59..369 CDD:472175 144/330 (44%)
pgcNP_001015682.1 A1_Propeptide 19..45 CDD:462326 7/28 (25%)
pepsin_retropepsin_like 71..383 CDD:472175 142/316 (45%)

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