DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bace and Pgc

DIOPT Version :10

Sequence 1:NP_609235.1 Gene:Bace / 34182 FlyBaseID:FBgn0032049 Length:372 Species:Drosophila melanogaster
Sequence 2:NP_579818.1 Gene:Pgc / 24864 RGDID:3943 Length:392 Species:Rattus norvegicus


Alignment Length:396 Identity:171/396 - (43%)
Similarity:237/396 - (59%) Gaps:37/396 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KTIAVVVLLAALASAELHRVPILKEQNFVKT--RQNVLAEKSYLRT-------KYQLPSL--RSV 56
            |.:.|.:|...|..|.|.|||:.|.::..:|  .|.||  |.:|:|       ||...:.  .||
  Rat     2 KWMVVALLCLPLLEASLLRVPLRKMKSIRETMKEQGVL--KDFLKTHKYDPGQKYHFGNFGDYSV 64

  Fly    57 DEEQLSNSMNMAYYGAISIGTPAQSFKVLFDSGSSNLWVPSNTCKSDACLTHNQYDSSASSTYVA 121
            ..|.:: .|:.:|:|.||||||.|:|.||||:|||||||.|..|:|:||.||.:::.|.||||..
  Rat    65 LYEPMA-YMDASYFGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQSEACTTHARFNPSKSSTYYT 128

  Fly   122 NGESFSIQYGTGSLTGYLSTDTVDVNGLSIQSQTFAESTNEPGTNFNDANFDGILGMAYESLAVD 186
            .|::||:|||||||||:...||:.|..:.:.:|.|..|.|||||||..|.||||:|:||..|:..
  Rat   129 EGQTFSLQYGTGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPGLSSG 193

  Fly   187 GVAPPFYNMVSQGLVDNSVFSFYL-ARDGTSTMGGELIFGGSDASLYSGALTYVPISEQGYWQFT 250
            |.......|:.:|.:...:|..|| ::.|::  ||:::|||.|.:||:|.:|:||::::.|||.|
  Rat   194 GATTALQGMLGEGALSQPLFGVYLGSQQGSN--GGQIVFGGVDKNLYTGEITWVPVTQELYWQIT 256

  Fly   251 ----MAGSSIDGYSLCDDCQAIADTGTSLIVAPYNAYITLSEILNV-----GEDG--YLDCSSVS 304
                :.|....|:.....||.|.||||||:|.|..   .|||:|..     ||.|  ::.|.|||
  Rat   257 IDDFLIGDQASGWCSSQGCQGIVDTGTSLLVMPAQ---YLSELLQTIGAQEGEYGEYFVSCDSVS 318

  Fly   305 SLPDVTFNIGGTNFVLKPSAYIIQSDGNCMSAFEYM------GTDFWILGDVFIGQYYTEFDLGN 363
            |||.::|.:.|..|.|.||:||||.|..||...|.:      |...|||||||:..||..||:||
  Rat   319 SLPTLSFVLNGVQFPLSPSSYIIQEDNFCMVGLESISLTSESGQPLWILGDVFLRSYYAIFDMGN 383

  Fly   364 NRIGFA 369
            |::|.|
  Rat   384 NKVGLA 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BaceNP_609235.1 pepsin_retropepsin_like 59..369 CDD:472175 149/327 (46%)
PgcNP_579818.1 A1_Propeptide 20..46 CDD:462326 10/27 (37%)
pepsin_retropepsin_like 73..391 CDD:472175 148/322 (46%)

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