DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment d and XIA

DIOPT Version :9

Sequence 1:NP_001188730.1 Gene:d / 34179 FlyBaseID:FBgn0262029 Length:1426 Species:Drosophila melanogaster
Sequence 2:NP_171954.1 Gene:XIA / 839480 AraportID:AT1G04600 Length:1730 Species:Arabidopsis thaliana


Alignment Length:969 Identity:254/969 - (26%)
Similarity:400/969 - (41%) Gaps:200/969 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   469 NSSPKD-------MQDLIHLSGPLTEHAVMRTLQARFNERRYFTNVGPILLSINPYLDVGNPLTL 526
            |..|||       :.|:..|: .|.|..|:..|:.|:|....:|..|.||:::||:..:.:   |
plant    50 NVYPKDPEFPELGVDDMTKLA-YLHEPGVLLNLKCRYNANEIYTYTGNILIAVNPFKRLPH---L 110

  Fly   527 TSTRAM---------PLAPQLQKIVQEAVRQQSETGYPQAIILSGTSGAGKTANAMLMLRQLFAI 582
            ..:..|         .|:|....:...|.|:....|..|||::||.||||||.:.. ||.|..|.
plant   111 YGSETMKQYKGTAFGELSPHPFAVADSAYRKMINEGVSQAILVSGESGAGKTESTK-MLMQYLAY 174

  Fly   583 AGGGPETD---AFKHLAAAFTVLRSLGSAKTTTNSESSRIGQFIEVQVTD-GALYRTKIHCYFLD 643
            .||..|::   ..:.:..:..||.:.|:|||..|:.|||.|:|:|:|... |.:....|..|.|:
plant   175 MGGRAESEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLE 239

  Fly   644 QTRVIRPLPKEKNYHIFYQLLAGLSRE-ERQKLHLDGYSPANLRYLRGDIGQNEQ--------ED 699
            ::||.:....|:|||.||.|.|...:| ||.||.    .|:..|||      |:.        :|
plant   240 RSRVCQVSDPERNYHCFYMLCAAPEQETERYKLG----KPSTFRYL------NQSNCYALDGLDD 294

  Fly   700 AARFQAWKTCLGILGIPFLD---VVRVLAAVLLLGNVQFIDGGGLEV----DVKGETELNSVASL 757
            :..:.|.:..:.::||...:   :.||:||:|.|||::|..|...|.    |.|....|...|.|
plant   295 SKEYLATRKAMDVVGINSEEQDGIFRVVAAILHLGNIEFAKGEESEASEPKDEKSRFHLKVAAEL 359

  Fly   758 LGVPPAALFRGLTTRTHNVRGQLVKSVCGDGDANMTRDCLAKALYCRTVATIVRRANSLKRLGST 822
            ......||...|..|....|.:.:........|.:.||.|||.:|.:....:|.:.|:       
plant   360 FMCDGKALEDSLCKRVMVTRDESITKSLDPDSAALGRDALAKIVYSKLFDWLVTKINN------- 417

  Fly   823 LGTLSSDSNESVHNQADVASQHASTIGGGNAGSKSMAALNNAVRHATSDGFIGILDMFGFEEPSP 887
              ::..|.|          |:|                            .||:||::|||....
plant   418 --SIGQDPN----------SKH----------------------------IIGVLDIYGFESFKT 442

  Fly   888 HAHLEHLCINLCAETMQHFYNTHIFKSSVESCRDEGIVCD-TEVDYVDNVPCIDLISSLRTGLLS 951
            :: .|..||||..|.:|..:|.|:||...|....|.|  | :.::::||...:|||.....|:::
plant   443 NS-FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEI--DWSYIEFIDNQDVLDLIEKKPGGIIA 504

  Fly   952 MLDAECSV-RGTAESYVTKLKVQHRSSTRLETKPTAEPHDPRMFLIRHFAGRVEYDTTDFLDTNR 1015
            :||..|.. |.|.:::..||....::..|. .||.....|   |.|.|:||.|.|.|..|||.|:
plant   505 LLDEACMFPRSTHDTFAQKLYQTFKNHKRF-GKPKLAQTD---FTICHYAGDVTYQTELFLDKNK 565

  Fly  1016 DVVPDDLVGVFYKHTCNFGFATHLFGSELKALYAQQQAPRGLSFRISPTSHSDLLNGDEPVSTLT 1080
            |.|..:...:.....|:|          :.:|:..      |....|.||         ..|::.
plant   566 DYVVGEHQALLSSSDCSF----------VSSLFPP------LPEESSKTS---------KFSSIG 605

  Fly  1081 QDFHTRLDNLLRTLVHARPHFVRCIRSNGTEAARSFDRATVVRQIRSLQVLETVNLMASGFPHRM 1145
            ..|..:|.:||.:|....||::||::.|.......|:...::.|:|...|:|.:.:..:|:|.|.
plant   606 SQFKQQLQSLLESLSTTEPHYIRCVKPNNLLKPDIFENINILHQLRCGGVMEAIRISCAGYPTRK 670

  Fly  1146 RFKQFNARYRMLAPFRLLRRSEDKALEDCQLILKYAMEQPPVLDGSVTL-AWAPGKRHVFLSEGI 1209
            .|.:|..|:|:||| ...:.|.|: ::.|:.:|           ..|.| .:..||..|||..|.
plant   671 PFNEFLTRFRILAP-ETTKSSYDE-VDACKKLL-----------AKVDLKGFQIGKTKVFLRAGQ 722

  Fly  1210 RQHLEHLRTEIRHKSATLMQATWRGWWWRKKMGNGGAKRSKIPGL---------------QQAPL 1259
            ...::..|.|:...||.::|.....:..|||.....|..::|..|               :.|.|
plant   723 MAEMDAHRAEVLGHSARIIQRNVLTYQSRKKFLLLQAASTEIQALCRGQVARVWFETMRREAASL 787

  Fly  1260 PNNKTTPNSAAQN------KAASSTMAALAAVAAAAPISV------------------------- 1293
            ...|.......||      .:|.|....:.|.||...:.:                         
plant   788 RIQKQARTYICQNAYKTLCSSACSIQTGMRAKAARIELQLRKKRRATIIIQSQIRRCLCHQRYVR 852

  Fly  1294 PRLSAKTTSLGIGGTVARP--RPQPIAGTPP---PDPQEKCDQKIIQQTCNLFGLDLER 1347
            .:.:|.||..|....|||.  |...:|....   .|.:.|.:.::.:.|.|   |:||:
plant   853 TKKAAITTQCGWRVKVARRELRNLKMAAKETGALQDAKTKLENQVEELTSN---LELEK 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dNP_001188730.1 MYSc 476..1217 CDD:214580 213/772 (28%)
MYSc_Myo20 488..1206 CDD:276847 207/749 (28%)
XIANP_171954.1 Myosin_N 11..47 CDD:280832
MYSc 59..727 CDD:214580 213/774 (28%)
MYSc_Myo11 75..719 CDD:276835 207/749 (28%)
SPEC 869..1036 CDD:295325 11/43 (26%)
TACC 974..1189 CDD:282818
MyosinXI_CBD 1278..1699 CDD:271259
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0160
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D311886at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.