DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment d and ATM2

DIOPT Version :9

Sequence 1:NP_001188730.1 Gene:d / 34179 FlyBaseID:FBgn0262029 Length:1426 Species:Drosophila melanogaster
Sequence 2:NP_001078755.1 Gene:ATM2 / 835516 AraportID:AT5G54280 Length:1220 Species:Arabidopsis thaliana


Alignment Length:1036 Identity:260/1036 - (25%)
Similarity:414/1036 - (39%) Gaps:261/1036 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   475 MQDLIHLSGPLTEHAVMRTLQARFNERRYFTNVGPILLSINPYLDV---GNPLTLTSTRAMPLAP 536
            ::|||.|| .|.|.:|:..|:.|:.:...::..||:|:::||:.:|   ||.:.....:.:..||
plant   215 VEDLIQLS-YLNEPSVLYNLRVRYLQDVIYSKAGPVLIAVNPFKNVEIYGNDVISAYQKKVMDAP 278

  Fly   537 QLQKIVQEAVRQQSETGYPQAIILSGTSGAGKTANAMLMLRQLFAIAGG--GPETDAFKHLAAAF 599
            .:..:...|..:.......|::|:||.||||||..|...::.|.|:.||  |.|.:..|    ..
plant   279 HVYAVADAAYDEMMREEKNQSLIISGESGAGKTETAKFAMQYLAALGGGSCGVEYEILK----TT 339

  Fly   600 TVLRSLGSAKTTTNSESSRIGQFIEVQVTD-GALYRTKIHCYFLDQTRVIRPLPKEKNYHIFYQL 663
            .:|.:.|:|||:.|:.|||.|:.||:..:. |.:...|:..:.|:::||::....|::|||||:|
plant   340 CILEAFGNAKTSRNANSSRFGKLIEIHFSAMGKICGAKLETFLLEKSRVVQLFNGERSYHIFYEL 404

  Fly   664 LAGLSREERQKLHLDGYSPANLRYLRGDIGQNE------QEDAARFQAWKTCLGILGIPFLDVVR 722
            .||.|...:::|.|.  :.:...||    .|::      .:||.:|........|:.||.....|
plant   405 CAGASPILKERLKLK--TASEYTYL----SQSDCLTIAGVDDAQKFHKLLEAFDIVQIPKEHQER 463

  Fly   723 ---VLAAVLLLGNVQF-IDGGGLEVDVKGETELNSVASLLGVPPAALFRGLTTRTHNVRGQLVKS 783
               :|||||.||||.| :......|:|..:..:.:.|.|:|.....|...|:||........:..
plant   464 AFALLAAVLWLGNVSFRVTDNENHVEVVADEAVANAAMLMGCNTEELMVVLSTRKLQAGTDCIAK 528

  Fly   784 VCGDGDANMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTI 848
            ......|...||.:||.:|......:|.:.|.                             |..:
plant   529 KLTLRQATDMRDGIAKFIYANLFDWLVEQINI-----------------------------ALEV 564

  Fly   849 GGGNAGSKSMAALNNAVRHATSDGFIGILDMFGFEEPSPHAHLEHLCINLCAETMQHFYNTHIFK 913
            |....|..                 |.|||::|||....:: .|..|||...|.:|..:|.|:||
plant   565 GKSRTGRS-----------------ISILDIYGFESFKNNS-FEQFCINYANERLQQHFNRHLFK 611

  Fly   914 SSVESCRDEGIVCD-TEVDYVDNVPCIDLISSLRTGLLSMLDAECSV-RGTAESYVTKLKVQHRS 976
            ...|...::||  | |:|::|||..|:|||.....||||:||.|.:. :.|..::..||| ||  
plant   612 LEQEEYEEDGI--DWTKVEFVDNQECLDLIEKKPIGLLSLLDEESNFPKATDLTFANKLK-QH-- 671

  Fly   977 STRLETKPTAEPHDPRMFLIRHFAGRVEYDTTDFLDTNRDVVPDDLVGVFYKHTCNFGFATHLFG 1041
               |:|....:....|.|.:.|:||.|.|||..||:.|||.:|.||:.:.....|..   ..||.
plant   672 ---LKTNSCFKGERGRAFRVNHYAGEVLYDTNGFLEKNRDPLPADLINLLSSCDCQL---LKLFS 730

  Fly  1042 SELKALYAQQQAPRGLSFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRTLVHARPHFVRCIR 1106
            ::::   .:.|.|              |:..|....|:...|..:|..|:..|.:..|||:|||:
plant   731 TKMR---GKSQKP--------------LMLSDSTNQTVGTKFKGQLFKLMNKLENTSPHFIRCIK 778

  Fly  1107 SNGTEAARSFDRATVVRQIRSLQVLETVNLMASGFPHRMRFKQFNARYRMLAPFRLLRRSEDKAL 1171
            .|..:..|.::...|::|:|...|||.|.:..||:|.|:..::|..||..|.       |:.|..
plant   779 PNSKQLPRVYEEDLVLQQLRCCGVLEVVRISRSGYPTRLTHQEFAGRYGFLL-------SDKKVA 836

  Fly  1172 ED-----CQLILKYAMEQPPVLDGSVTLAWAPGKRHVF-------------LSEGIRQHLEH--- 1215
            :|     ..::.:|.:.......|...|....|:..:|             |.:..|.||..   
plant   837 QDPLSVSIAVLKQYDVHPEMYQVGYTKLYLRTGQIGIFEDRRKKVLQGIVGLQKHFRGHLSRAYF 901

  Fly  1216 ---------LRTEIRHKSATL--------------------------MQATWRGWWWR------- 1238
                     |::.||.::|..                          :|:..|||..|       
plant   902 QNMRKVTLVLQSYIRGENARRLFDTEAKFHADSVSEASTDELSAVIHLQSAVRGWLARKHFNSMQ 966

  Fly  1239 --KKMGNGGAKRSKIPGL-----QQAPLPNNKTTPNSAA-------QNKAASS------------ 1277
              |::.|...|..:..|.     :..||...:..|.|.:       :::||.|            
plant   967 RQKELRNVATKSKRKAGRRISEDKDIPLEQPQVQPTSMSDLQKRILKSEAALSQKEEENTALREQ 1031

  Fly  1278 ------------------------TMAALAAVAAAAPISVPRLSAKTTSLGIGGTVARPRPQPIA 1318
                                    .|::|....|||..|   |:|::.:...||.      |..:
plant  1032 LRQFEERWSEYDIKMKSMEETWQKQMSSLQMSLAAARKS---LAAESITGQAGGR------QDTS 1087

  Fly  1319 GTPPPDPQEKCDQKIIQQTCNLFGLDLERPPPVPPSRSYTITGNSKISYPQNRVMKMNFPE 1379
            .:|                   ||.|         |.....||...:..|.|:....|.||
plant  1088 ISP-------------------FGYD---------SEDTMSTGTPGVRTPTNKFTNGNTPE 1120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dNP_001188730.1 MYSc 476..1217 CDD:214580 217/788 (28%)
MYSc_Myo20 488..1206 CDD:276847 206/753 (27%)
ATM2NP_001078755.1 MYSc 208..879 CDD:214580 213/756 (28%)
MYSc_Myo8 227..867 CDD:276834 204/731 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0160
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D311886at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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