DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment d and Myh10

DIOPT Version :9

Sequence 1:NP_001188730.1 Gene:d / 34179 FlyBaseID:FBgn0262029 Length:1426 Species:Drosophila melanogaster
Sequence 2:XP_008766103.1 Gene:Myh10 / 79433 RGDID:71000 Length:2007 Species:Rattus norvegicus


Alignment Length:916 Identity:238/916 - (25%)
Similarity:382/916 - (41%) Gaps:181/916 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   427 SQQLPFIPQSKHTNPCQSVKTLPFGFGFSESQQKMQQQQQQGNSSPKDMQDLIHLSGP------- 484
            :::|.:||..:|.....|:|.       ....:.|.:..:.|..:..:..|:..::.|       
  Rat    32 AKKLVWIPSERHGFEAASIKE-------ERGDEVMVELAENGKKAMVNKDDIQKMNPPKFSKVED 89

  Fly   485 ------LTEHAVMRTLQARFNERRYFTNVGPILLSINPYLDVGNPLTLTSTRAM-------PLAP 536
                  |.|.:|:..|:.|:.....:|..|...:.||||.::  |:...:...|       .:.|
  Rat    90 MAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNL--PIYSENIIEMYRGKKRHEMPP 152

  Fly   537 QLQKIVQEAVRQQSETGYPQAIILSGTSGAGKTANAMLMLRQLFAIAGG---------------- 585
            .:..|.:.|.|...:....|:|:.:|.||||||.|...:::.|..:|..                
  Rat   153 HIYAISESAYRCMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKDHNIPQESPKP 217

  Fly   586 -GPETDAFKHLAAAFTVLRSLGSAKTTTNSESSRIGQFIEV--QVTDGALYRTKIHCYFLDQTRV 647
             .|:.:..:.|..|..:|.|.|:|||..|..|||.|:||.:  .|| |.:....|..|.|:::|.
  Rat   218 VKPQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVT-GYIVGANIETYLLEKSRA 281

  Fly   648 IRPLPKEKNYHIFYQLLAGLSREERQKLHLDGYSPANLRYL-RGDIGQNEQEDAARFQAWKTCLG 711
            :|....|:.:|||||||:|.....:..|.|:|::  |.|:| .|.|....|:|...||.....:.
  Rat   282 VRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFN--NYRFLSNGYIPIPGQQDKDNFQETMEAMH 344

  Fly   712 ILGI---PFLDVVRVLAAVLLLGNVQF-----IDGGGLEVDVKGETELNSVASLLGVPPAALFRG 768
            |:|.   ..|.:::|:::||..||:.|     .|    :..:...|....:..|||:......|.
  Rat   345 IMGFSHEEILSMLKVVSSVLQFGNISFKKERNTD----QASMPENTVAQKLCHLLGMNVMEFTRA 405

  Fly   769 LTTRTHNVRGQLVKSVCGDGDANMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNES 833
            :.|....|....|:.......|:...:.||||.|.|....:|.|.|.                  
  Rat   406 ILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINK------------------ 452

  Fly   834 VHNQADVASQHASTIGGGNAGSKSMAALNNAVRHATSDGFIGILDMFGFEEPSPHAHLEHLCINL 898
                                      ||:...|...|  ||||||:.|||....:: .|.||||.
  Rat   453 --------------------------ALDRTKRQGAS--FIGILDIAGFEIFELNS-FEQLCINY 488

  Fly   899 CAETMQHFYNTHIFKSSVESCRDEGIVCDTEVDY-VDNVPCIDLIS--SLRTGLLSMLDAEC-SV 959
            ..|.:|..:|..:|....|..:.|||..:. :|: :|..||||||.  :...|:|::||.|| ..
  Rat   489 TNEKLQQLFNHTMFILEQEEYQREGIEWNF-IDFGLDLQPCIDLIERPANPPGVLALLDEECWFP 552

  Fly   960 RGTAESYVTKLKVQHRSSTRLETKPTAEPHDPRMFLIRHFAGRVEYDTTDFLDTNRDVVPDDLVG 1024
            :.|.:::|.|| ||.:.|.....|| .:..|...|.|.|:||:|:|...::|..|.|.:.|::..
  Rat   553 KATDKTFVEKL-VQEQGSHSKFQKP-RQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVAT 615

  Fly  1025 VFYKHTCNFGFATHLFGSELKALYAQQQAPRGLSFRISPTSHSDLLNG--DEPVS---------- 1077
            :.  |..:..|...|:..|::              .|...|..|.::|  :.||.          
  Rat   616 LL--HQSSDRFVAELWKDEIQ--------------NIQRASFYDSVSGLHEPPVDRIVGLDQVTG 664

  Fly  1078 ------------------TLTQDFHTRLDNLLRTLVHARPHFVRCIRSNGTEAARSFDRATVVRQ 1124
                              |:.|.:...|..|:.||.:..|:|||||..|..:.|...|...|:.|
  Rat   665 MTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQ 729

  Fly  1125 IRSLQVLETVNLMASGFPHRMRFKQFNARYRMLAPFRLLRRSEDKALEDCQLILKYAMEQPPVLD 1189
            :|...|||.:.:...|||:|:.|::|..||.:|.|..:.:...| ..:.|:.::: |:|..|.| 
  Rat   730 LRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMD-GKQACERMIR-ALELDPNL- 791

  Fly  1190 GSVTLAWAPGKRHVFLSEGIRQHLEHLR----TEIRHKSATLMQATWRGWWWRKKMGNGGAKRSK 1250
                  :..|:..:|...|:..|||..|    |:|    ....||..||:..||.......:.|.
  Rat   792 ------YRIGQSKIFFRAGVLAHLEEERDLKITDI----IIFFQAVCRGYLARKAFAKKQQQLSA 846

  Fly  1251 IPGLQQ 1256
            :..||:
  Rat   847 LKVLQR 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dNP_001188730.1 MYSc 476..1217 CDD:214580 218/822 (27%)
MYSc_Myo20 488..1206 CDD:276847 210/786 (27%)
Myh10XP_008766103.1 Myosin_N 34..72 CDD:280832 8/44 (18%)
Myosin_head 87..802 CDD:278492 212/798 (27%)
MYSc_Myh10 99..802 CDD:276952 210/786 (27%)
Myosin_tail_1 879..1959 CDD:279860
DUF2317 <1142..1253 CDD:302887
ApoLp-III_like 1224..1371 CDD:304399
GBP_C <1535..1641 CDD:303769
coiled coil 1631..1641 CDD:293879
DUF106 <1676..>1727 CDD:303007
DUF2570 1800..>1898 CDD:305162
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0160
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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